Strain Fitness in Variovorax sp. SCN45 around GFF467

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF465 and GFF466 are separated by 63 nucleotidesGFF466 and GFF467 are separated by 32 nucleotidesGFF467 and GFF468 are separated by 143 nucleotides GFF465 - Prolipoprotein diacylglyceryl transferase, at 504,315 to 505,139 GFF465 GFF466 - hypothetical protein, at 505,203 to 505,472 GFF466 GFF467 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 505,505 to 506,278 GFF467 GFF468 - Transcriptional regulator, LysR family, at 506,422 to 507,360 GFF468 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 505.258 kb on - strand, within GFF466at 505.258 kb on - strand, within GFF466at 505.518 kb on + strandat 505.518 kb on + strandat 505.518 kb on + strandat 505.519 kb on - strandat 505.519 kb on - strandat 505.519 kb on - strandat 505.656 kb on + strand, within GFF467at 505.656 kb on + strand, within GFF467at 505.657 kb on - strand, within GFF467at 505.686 kb on + strand, within GFF467at 505.687 kb on - strand, within GFF467at 505.687 kb on - strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.803 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.812 kb on + strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.813 kb on - strand, within GFF467at 505.825 kb on - strand, within GFF467at 505.942 kb on - strand, within GFF467at 505.942 kb on - strand, within GFF467at 506.160 kb on + strand, within GFF467at 506.160 kb on + strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.161 kb on - strand, within GFF467at 506.327 kb on + strandat 506.327 kb on + strandat 506.328 kb on - strandat 506.328 kb on - strandat 506.328 kb on - strandat 506.348 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.367 kb on + strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.368 kb on - strandat 506.795 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.903 kb on - strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.208 kb on + strand, within GFF468at 507.209 kb on - strand, within GFF468at 507.209 kb on - strand, within GFF468

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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505,258 - GFF466 0.20 -0.7
505,258 - GFF466 0.20 -0.2
505,518 + +0.6
505,518 + -0.5
505,518 + +0.5
505,519 - -2.0
505,519 - -0.6
505,519 - +0.0
505,656 + GFF467 0.20 +2.3
505,656 + GFF467 0.20 -0.2
505,657 - GFF467 0.20 +0.4
505,686 + GFF467 0.23 -0.1
505,687 - GFF467 0.24 +0.3
505,687 - GFF467 0.24 -0.2
505,803 + GFF467 0.39 +0.5
505,803 + GFF467 0.39 +0.4
505,803 + GFF467 0.39 -0.1
505,803 + GFF467 0.39 -0.3
505,812 + GFF467 0.40 -0.7
505,812 + GFF467 0.40 +0.7
505,812 + GFF467 0.40 +0.6
505,812 + GFF467 0.40 -0.5
505,813 - GFF467 0.40 -0.2
505,813 - GFF467 0.40 -0.1
505,813 - GFF467 0.40 -0.2
505,825 - GFF467 0.41 +0.8
505,942 - GFF467 0.56 -1.6
505,942 - GFF467 0.56 +0.3
506,160 + GFF467 0.85 -0.9
506,160 + GFF467 0.85 -0.7
506,161 - GFF467 0.85 +0.2
506,161 - GFF467 0.85 -0.6
506,161 - GFF467 0.85 -1.6
506,161 - GFF467 0.85 +0.0
506,327 + -0.7
506,327 + -0.3
506,328 - -0.3
506,328 - -1.9
506,328 - -1.6
506,348 + +1.1
506,367 + +0.0
506,367 + -0.7
506,367 + +0.0
506,367 + +1.6
506,368 - +0.6
506,368 - +0.1
506,368 - -0.1
506,368 - -0.8
506,795 + GFF468 0.40 -0.4
506,902 + GFF468 0.51 -1.1
506,902 + GFF468 0.51 +1.0
506,902 + GFF468 0.51 -0.7
506,903 - GFF468 0.51 +0.9
506,965 + GFF468 0.58 -0.4
506,965 + GFF468 0.58 +0.3
506,965 + GFF468 0.58 +1.0
506,965 + GFF468 0.58 -0.3
506,965 + GFF468 0.58 -1.3
506,965 + GFF468 0.58 -0.2
506,965 + GFF468 0.58 +1.3
506,966 - GFF468 0.58 +0.7
506,966 - GFF468 0.58 -0.4
506,966 - GFF468 0.58 -0.6
506,966 - GFF468 0.58 -1.5
506,966 - GFF468 0.58 -0.3
506,966 - GFF468 0.58 -0.9
506,966 - GFF468 0.58 -0.4
506,966 - GFF468 0.58 -0.9
506,966 - GFF468 0.58 -0.5
506,966 - GFF468 0.58 -0.1
506,966 - GFF468 0.58 -0.3
507,073 + GFF468 0.69 +0.7
507,073 + GFF468 0.69 +0.1
507,073 + GFF468 0.69 +0.4
507,073 + GFF468 0.69 -0.1
507,073 + GFF468 0.69 +0.6
507,073 + GFF468 0.69 -0.4
507,073 + GFF468 0.69 -0.6
507,073 + GFF468 0.69 -0.2
507,073 + GFF468 0.69 -0.3
507,073 + GFF468 0.69 +0.9
507,073 + GFF468 0.69 +1.1
507,073 + GFF468 0.69 -0.9
507,073 + GFF468 0.69 +0.8
507,073 + GFF468 0.69 -0.2
507,073 + GFF468 0.69 -2.4
507,073 + GFF468 0.69 -0.5
507,074 - GFF468 0.69 +0.8
507,074 - GFF468 0.69 -0.2
507,074 - GFF468 0.69 +1.7
507,074 - GFF468 0.69 -0.9
507,074 - GFF468 0.69 -0.6
507,121 + GFF468 0.74 +0.9
507,121 + GFF468 0.74 +0.4
507,122 - GFF468 0.75 +1.9
507,122 - GFF468 0.75 -0.3
507,122 - GFF468 0.75 -0.9
507,122 - GFF468 0.75 +0.1
507,208 + GFF468 0.84 +0.7
507,209 - GFF468 0.84 -0.2
507,209 - GFF468 0.84 -0.3

Or see this region's nucleotide sequence