Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF429 and GFF430 are separated by 40 nucleotides GFF430 and GFF431 are separated by 148 nucleotides
GFF429 - RND efflux system, inner membrane transporter, at 465,089 to 468,358
GFF429
GFF430 - RND efflux system, membrane fusion protein, at 468,399 to 469,649
GFF430
GFF431 - Esterase/lipase, at 469,798 to 470,694
GFF431
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 467.526 kb on + strand, within GFF429 at 467.527 kb on - strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.883 kb on + strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.884 kb on - strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.895 kb on + strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.896 kb on - strand, within GFF429 at 467.907 kb on + strand, within GFF429 at 467.907 kb on + strand, within GFF429 at 467.908 kb on - strand, within GFF429 at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.123 kb on + strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.124 kb on - strand at 468.207 kb on + strand at 468.208 kb on - strand at 468.291 kb on - strand at 468.302 kb on + strand at 468.302 kb on + strand at 468.303 kb on - strand at 468.303 kb on - strand at 468.303 kb on - strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.510 kb on + strand at 468.511 kb on - strand at 468.511 kb on - strand at 468.511 kb on - strand at 468.601 kb on + strand, within GFF430 at 468.601 kb on + strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.602 kb on - strand, within GFF430 at 468.643 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.964 kb on + strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 468.965 kb on - strand, within GFF430 at 469.088 kb on - strand, within GFF430 at 469.088 kb on - strand, within GFF430 at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.540 kb on + strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.541 kb on - strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.799 kb on + strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.800 kb on - strand at 469.923 kb on - strand, within GFF431 at 469.923 kb on - strand, within GFF431 at 470.325 kb on - strand, within GFF431 at 470.367 kb on - strand, within GFF431 at 470.531 kb on - strand, within GFF431 at 470.576 kb on + strand, within GFF431
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 467,526 + GFF429 0.75 +0.2 467,527 - GFF429 0.75 -0.3 467,883 + GFF429 0.85 -0.5 467,883 + GFF429 0.85 -0.3 467,883 + GFF429 0.85 -0.3 467,883 + GFF429 0.85 -0.8 467,884 - GFF429 0.85 +0.8 467,884 - GFF429 0.85 +0.1 467,884 - GFF429 0.85 -0.3 467,895 + GFF429 0.86 -1.1 467,895 + GFF429 0.86 -0.1 467,895 + GFF429 0.86 +0.0 467,895 + GFF429 0.86 -0.3 467,895 + GFF429 0.86 -0.4 467,895 + GFF429 0.86 -0.8 467,895 + GFF429 0.86 +0.3 467,895 + GFF429 0.86 -0.7 467,895 + GFF429 0.86 +0.2 467,895 + GFF429 0.86 -1.1 467,896 - GFF429 0.86 -1.6 467,896 - GFF429 0.86 -1.1 467,896 - GFF429 0.86 -0.1 467,896 - GFF429 0.86 -0.2 467,896 - GFF429 0.86 -1.1 467,896 - GFF429 0.86 +0.2 467,896 - GFF429 0.86 +0.2 467,896 - GFF429 0.86 -1.1 467,896 - GFF429 0.86 +1.2 467,896 - GFF429 0.86 +0.4 467,896 - GFF429 0.86 -0.5 467,896 - GFF429 0.86 -0.3 467,907 + GFF429 0.86 -1.3 467,907 + GFF429 0.86 -0.4 467,908 - GFF429 0.86 +0.6 468,123 + -0.8 468,123 + -1.0 468,123 + +0.3 468,123 + +0.2 468,123 + +0.7 468,123 + -0.8 468,123 + +0.2 468,123 + +0.2 468,123 + +0.2 468,123 + +0.2 468,123 + -1.1 468,123 + -0.4 468,123 + +0.9 468,123 + +0.1 468,123 + -0.2 468,123 + -1.6 468,123 + +0.1 468,123 + +0.5 468,123 + -1.2 468,123 + +0.1 468,124 - +0.4 468,124 - -0.1 468,124 - +0.0 468,124 - -0.5 468,124 - -0.6 468,124 - -1.6 468,124 - -1.1 468,124 - +1.2 468,124 - -0.6 468,124 - +0.5 468,124 - -0.5 468,124 - -0.8 468,124 - +0.1 468,207 + -1.2 468,208 - -0.3 468,291 - +0.7 468,302 + -0.9 468,302 + -0.5 468,303 - -0.0 468,303 - -1.3 468,303 - -1.1 468,510 + -1.2 468,510 + +0.2 468,510 + +0.7 468,510 + -1.5 468,510 + -0.7 468,510 + -0.6 468,511 - -1.3 468,511 - -0.3 468,511 - -0.4 468,601 + GFF430 0.16 -1.9 468,601 + GFF430 0.16 -0.5 468,602 - GFF430 0.16 +0.1 468,602 - GFF430 0.16 -0.2 468,602 - GFF430 0.16 -1.3 468,643 + GFF430 0.20 +1.1 468,964 + GFF430 0.45 +0.4 468,964 + GFF430 0.45 +0.9 468,964 + GFF430 0.45 +0.5 468,964 + GFF430 0.45 -0.2 468,964 + GFF430 0.45 +0.8 468,964 + GFF430 0.45 -0.5 468,964 + GFF430 0.45 -0.2 468,964 + GFF430 0.45 -0.4 468,965 - GFF430 0.45 +0.3 468,965 - GFF430 0.45 -0.1 468,965 - GFF430 0.45 +1.5 468,965 - GFF430 0.45 +0.0 468,965 - GFF430 0.45 -1.2 469,088 - GFF430 0.55 +0.9 469,088 - GFF430 0.55 +0.0 469,540 + +1.8 469,540 + +0.1 469,540 + +0.0 469,540 + -1.9 469,540 + -0.2 469,540 + +0.4 469,540 + +0.1 469,540 + +0.1 469,540 + -0.1 469,540 + -0.0 469,540 + -1.2 469,540 + -1.9 469,540 + +1.2 469,540 + -0.0 469,540 + +0.1 469,540 + +0.4 469,541 - -0.3 469,541 - -0.2 469,541 - -0.2 469,541 - -0.5 469,541 - -0.5 469,541 - -0.3 469,541 - +0.1 469,541 - +1.2 469,541 - +0.3 469,541 - +1.2 469,541 - +0.2 469,541 - -0.4 469,541 - -0.4 469,541 - -0.3 469,541 - +1.2 469,541 - -0.0 469,541 - -0.5 469,541 - -0.6 469,541 - -0.2 469,541 - -1.3 469,799 + +0.7 469,799 + -0.3 469,799 + -2.1 469,799 + -0.7 469,799 + -2.0 469,799 + -0.3 469,799 + -0.3 469,799 + -0.9 469,799 + +0.1 469,799 + -0.2 469,799 + -0.6 469,799 + -1.3 469,799 + -0.2 469,800 - -0.4 469,800 - +0.7 469,800 - +0.2 469,800 - +0.1 469,800 - +0.4 469,800 - +1.0 469,800 - -1.5 469,800 - -1.6 469,800 - +0.1 469,800 - +1.2 469,800 - +0.1 469,800 - +0.2 469,800 - +0.6 469,800 - -0.1 469,800 - +0.7 469,800 - +0.5 469,800 - +1.4 469,800 - +0.1 469,800 - -0.6 469,800 - -1.1 469,923 - GFF431 0.14 -0.6 469,923 - GFF431 0.14 +0.2 470,325 - GFF431 0.59 +1.2 470,367 - GFF431 0.63 -0.6 470,531 - GFF431 0.82 -1.7 470,576 + GFF431 0.87 -1.4
Or see this region's nucleotide sequence