Strain Fitness in Variovorax sp. SCN45 around GFF4086

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
298,297	+		GFF4085	0.13	-1.4
298,437	-		GFF4085	0.28	-0.9
299,116	-				-0.2
299,116	-				+0.4
299,117	+				-0.4
299,118	-				-0.7
299,118	-				+1.6
299,118	-				-1.1
299,118	-				-0.3
299,161	-				-0.6
299,174	+				+1.2
299,175	-				+0.7
299,175	-				+0.3
299,587	+		GFF4086	0.83	+0.8
299,588	-		GFF4086	0.83	+0.4
299,846	-		GFF4087	0.13	+0.9
300,011	-		GFF4087	0.27	+0.1
300,304	+		GFF4087	0.52	+0.7
300,304	+		GFF4087	0.52	-0.2
300,304	+		GFF4087	0.52	+0.2
300,305	-		GFF4087	0.52	-1.1
300,364	+		GFF4087	0.57	+0.0
300,364	+		GFF4087	0.57	-0.8
300,634	+		GFF4087	0.80	-0.1