Strain Fitness in Variovorax sp. SCN45 around GFF3961

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3959 and GFF3960 are separated by 60 nucleotidesGFF3960 and GFF3961 are separated by 248 nucleotidesGFF3961 and GFF3962 are separated by 213 nucleotides GFF3959 - Uncharacterized integral membrane endopeptidase Bmul_2226, at 159,299 to 160,558 GFF3959 GFF3960 - 3'-to-5' oligoribonuclease (orn), at 160,619 to 161,215 GFF3960 GFF3961 - ATP-dependent RNA helicase NGO0650, at 161,464 to 163,347 GFF3961 GFF3962 - Opine dehydrogenase (EC 1.5.1.28), at 163,561 to 164,634 GFF3962 Position (kb) 161 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 160.552 kb on - strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.558 kb on + strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.559 kb on - strandat 160.584 kb on - strandat 160.584 kb on - strandat 160.584 kb on - strandat 160.949 kb on + strand, within GFF3960at 160.949 kb on + strand, within GFF3960at 160.949 kb on + strand, within GFF3960at 160.949 kb on + strand, within GFF3960at 160.949 kb on + strand, within GFF3960at 160.950 kb on - strand, within GFF3960at 160.950 kb on - strand, within GFF3960at 160.950 kb on - strand, within GFF3960at 160.950 kb on - strand, within GFF3960at 160.950 kb on - strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.018 kb on + strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.019 kb on - strand, within GFF3960at 161.039 kb on + strand, within GFF3960at 161.039 kb on + strand, within GFF3960at 161.039 kb on + strand, within GFF3960at 161.039 kb on + strand, within GFF3960at 161.039 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.108 kb on + strand, within GFF3960at 161.109 kb on - strand, within GFF3960at 161.223 kb on + strandat 161.312 kb on + strandat 161.312 kb on + strandat 161.410 kb on + strandat 161.410 kb on + strandat 161.410 kb on + strandat 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.045 kb on + strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.046 kb on - strand, within GFF3961at 163.098 kb on + strand, within GFF3961at 163.490 kb on - strandat 163.597 kb on + strandat 163.598 kb on - strandat 163.598 kb on - strandat 163.844 kb on + strand, within GFF3962at 163.844 kb on + strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.845 kb on - strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.891 kb on + strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.892 kb on - strand, within GFF3962at 163.966 kb on + strand, within GFF3962at 163.966 kb on + strand, within GFF3962at 163.967 kb on - strand, within GFF3962at 164.039 kb on - strand, within GFF3962at 164.086 kb on + strand, within GFF3962at 164.087 kb on - strand, within GFF3962at 164.087 kb on - strand, within GFF3962at 164.311 kb on + strand, within GFF3962at 164.312 kb on - strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.329 kb on + strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962at 164.330 kb on - strand, within GFF3962

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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160,552 - -1.3
160,558 + +0.3
160,558 + +0.2
160,558 + +1.3
160,558 + -1.0
160,558 + -0.6
160,558 + -0.4
160,558 + +0.9
160,558 + +0.3
160,558 + -0.3
160,558 + +0.1
160,559 - +1.4
160,559 - -0.2
160,559 - +0.5
160,559 - -0.1
160,559 - +0.3
160,559 - -1.1
160,559 - -0.3
160,559 - -0.7
160,559 - -0.7
160,584 - +1.6
160,584 - -0.3
160,584 - -0.7
160,949 + GFF3960 0.55 -1.2
160,949 + GFF3960 0.55 -1.6
160,949 + GFF3960 0.55 +0.1
160,949 + GFF3960 0.55 +0.5
160,949 + GFF3960 0.55 -1.4
160,950 - GFF3960 0.55 -0.6
160,950 - GFF3960 0.55 +0.1
160,950 - GFF3960 0.55 -1.3
160,950 - GFF3960 0.55 -0.6
160,950 - GFF3960 0.55 +0.7
161,018 + GFF3960 0.67 +0.0
161,018 + GFF3960 0.67 -0.5
161,018 + GFF3960 0.67 +0.6
161,018 + GFF3960 0.67 +0.1
161,018 + GFF3960 0.67 -1.4
161,018 + GFF3960 0.67 +0.0
161,019 - GFF3960 0.67 -0.4
161,019 - GFF3960 0.67 +0.3
161,019 - GFF3960 0.67 -0.4
161,019 - GFF3960 0.67 +2.6
161,019 - GFF3960 0.67 -0.8
161,019 - GFF3960 0.67 -1.4
161,019 - GFF3960 0.67 -0.6
161,019 - GFF3960 0.67 +0.0
161,019 - GFF3960 0.67 -0.6
161,019 - GFF3960 0.67 -0.4
161,039 + GFF3960 0.70 -2.0
161,039 + GFF3960 0.70 +0.1
161,039 + GFF3960 0.70 -0.6
161,039 + GFF3960 0.70 -0.0
161,039 + GFF3960 0.70 -0.6
161,108 + GFF3960 0.82 -0.9
161,108 + GFF3960 0.82 +0.2
161,108 + GFF3960 0.82 +1.6
161,108 + GFF3960 0.82 -1.0
161,108 + GFF3960 0.82 -0.1
161,108 + GFF3960 0.82 -1.2
161,109 - GFF3960 0.82 -1.2
161,223 + +2.2
161,312 + -1.0
161,312 + -0.1
161,410 + -2.4
161,410 + +0.1
161,410 + -0.2
163,045 + GFF3961 0.84 +0.6
163,045 + GFF3961 0.84 +1.2
163,045 + GFF3961 0.84 +0.3
163,045 + GFF3961 0.84 -0.4
163,045 + GFF3961 0.84 +1.4
163,045 + GFF3961 0.84 +0.4
163,045 + GFF3961 0.84 +0.0
163,045 + GFF3961 0.84 -0.7
163,045 + GFF3961 0.84 -0.4
163,045 + GFF3961 0.84 -0.7
163,045 + GFF3961 0.84 +0.4
163,046 - GFF3961 0.84 -0.9
163,046 - GFF3961 0.84 -0.9
163,046 - GFF3961 0.84 +0.5
163,046 - GFF3961 0.84 +0.4
163,046 - GFF3961 0.84 -0.3
163,046 - GFF3961 0.84 -0.0
163,098 + GFF3961 0.87 +0.3
163,490 - +0.6
163,597 + +0.0
163,598 - -0.3
163,598 - -1.2
163,844 + GFF3962 0.26 -0.6
163,844 + GFF3962 0.26 -0.3
163,845 - GFF3962 0.26 -1.0
163,845 - GFF3962 0.26 +0.7
163,845 - GFF3962 0.26 -0.3
163,891 + GFF3962 0.31 -0.3
163,891 + GFF3962 0.31 -0.2
163,891 + GFF3962 0.31 +0.8
163,891 + GFF3962 0.31 -0.3
163,892 - GFF3962 0.31 +0.9
163,892 - GFF3962 0.31 +0.2
163,892 - GFF3962 0.31 -0.7
163,892 - GFF3962 0.31 +0.7
163,892 - GFF3962 0.31 -1.1
163,966 + GFF3962 0.38 -0.4
163,966 + GFF3962 0.38 -0.4
163,967 - GFF3962 0.38 +0.4
164,039 - GFF3962 0.45 +0.0
164,086 + GFF3962 0.49 +0.7
164,087 - GFF3962 0.49 +0.9
164,087 - GFF3962 0.49 -0.2
164,311 + GFF3962 0.70 +0.0
164,312 - GFF3962 0.70 -0.1
164,329 + GFF3962 0.72 -1.0
164,329 + GFF3962 0.72 -1.2
164,329 + GFF3962 0.72 +1.6
164,329 + GFF3962 0.72 -0.5
164,330 - GFF3962 0.72 -0.9
164,330 - GFF3962 0.72 -0.6
164,330 - GFF3962 0.72 +0.8
164,330 - GFF3962 0.72 +1.6

Or see this region's nucleotide sequence