Strain Fitness in Variovorax sp. SCN45 around GFF3909

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
111,784	+				+0.1
111,785	-				+0.5
111,904	+				+0.7
111,904	+				+0.0
111,904	+				+0.4
111,904	+				+0.2
111,904	+				+0.0
111,904	+				+0.0
111,904	+				+0.3
111,904	+				+0.2
111,904	+				+0.0
111,904	+				+0.6
111,905	-				-1.4
111,905	-				+1.2
111,905	-				-1.3
111,905	-				+0.2
111,905	-				+0.4
111,905	-				-0.6
111,905	-				-3.2
111,905	-				+0.1
111,905	-				+1.0
112,145	-				+0.3
112,155	+				-0.1
112,156	-				-0.1
112,158	+				-0.3
112,158	+				+0.5
112,159	-				-0.3
112,159	-				-0.2
112,159	-				-0.4
112,159	-				-0.0
112,159	-				-1.4
112,159	-				-0.4
112,341	+		GFF3908	0.40	+0.1
112,341	+		GFF3908	0.40	+0.1
112,342	-		GFF3908	0.40	-0.8
112,640	+				+1.2
112,640	+				+0.4
112,641	-				+0.2
112,641	-				-0.6
112,704	+				+1.3
112,704	+				-0.4
112,705	-				+0.2
112,705	-				+0.1
112,780	+				+1.3
112,780	+				-0.1
112,780	+				-0.9
112,780	+				-1.4
112,780	+				+1.3
112,780	+				-1.6
112,780	+				-0.8
112,780	+				-0.3
112,781	-				-0.1
112,781	-				+0.7
112,781	-				+1.1
112,781	-				-0.4
112,781	-				+0.8
112,781	-				+0.6
112,781	-				+0.3
113,119	+		GFF3909	0.14	-0.4
113,119	+		GFF3909	0.14	+0.0
113,120	-		GFF3909	0.14	+0.9
113,120	-		GFF3909	0.14	-1.0
113,120	-		GFF3909	0.14	-0.2
113,120	-		GFF3909	0.14	-0.7
113,122	+		GFF3909	0.15	-0.4
113,123	-		GFF3909	0.15	-0.1
113,123	-		GFF3909	0.15	+0.3
113,123	-		GFF3909	0.15	-0.4
113,123	-		GFF3909	0.15	-1.6
113,165	+		GFF3909	0.16	-1.8
113,185	+		GFF3909	0.17	-0.2
113,220	+		GFF3909	0.18	-0.3
113,221	-		GFF3909	0.18	+2.2
113,275	+		GFF3909	0.20	-0.9
113,276	-		GFF3909	0.20	-1.2
113,276	-		GFF3909	0.20	-0.7
113,276	-		GFF3909	0.20	+1.1
113,276	-		GFF3909	0.20	+0.2
113,305	+		GFF3909	0.21	-0.4
113,306	-		GFF3909	0.21	+1.3
113,329	+		GFF3909	0.22	-0.3
113,329	+		GFF3909	0.22	-0.4
113,329	+		GFF3909	0.22	-1.7
113,329	+		GFF3909	0.22	-0.8
113,329	+		GFF3909	0.22	-0.4
113,329	+		GFF3909	0.22	-0.3
113,329	+		GFF3909	0.22	+0.8
113,329	+		GFF3909	0.22	+0.1
113,329	+		GFF3909	0.22	-1.6
113,329	+		GFF3909	0.22	-0.5
113,329	+		GFF3909	0.22	-0.7
113,329	+		GFF3909	0.22	-1.3
113,329	+		GFF3909	0.22	+0.9
113,329	+		GFF3909	0.22	-0.2
113,330	-		GFF3909	0.22	-0.2
113,330	-		GFF3909	0.22	+0.4
113,330	-		GFF3909	0.22	-0.6
113,330	-		GFF3909	0.22	-0.2
113,330	-		GFF3909	0.22	+1.0
113,330	-		GFF3909	0.22	-1.2
113,330	-		GFF3909	0.22	+0.0
113,330	-		GFF3909	0.22	+0.3
113,330	-		GFF3909	0.22	+0.9
113,330	-		GFF3909	0.22	+0.4
113,332	+		GFF3909	0.22	-0.7
113,449	+		GFF3909	0.26	-1.6
113,449	+		GFF3909	0.26	-0.1
113,449	+		GFF3909	0.26	+0.2
113,449	+		GFF3909	0.26	+0.3
113,449	+		GFF3909	0.26	-0.0
113,450	-		GFF3909	0.26	-0.4
113,450	-		GFF3909	0.26	-0.8
113,450	-		GFF3909	0.26	+0.3
113,450	-		GFF3909	0.26	-0.5
113,450	-		GFF3909	0.26	-0.4
113,450	-		GFF3909	0.26	-0.8
113,450	-		GFF3909	0.26	-1.3
113,450	-		GFF3909	0.26	-0.7
113,530	+		GFF3909	0.29	-0.6
113,530	+		GFF3909	0.29	-0.3
113,530	+		GFF3909	0.29	-0.2
113,530	+		GFF3909	0.29	-3.4
113,530	+		GFF3909	0.29	-0.2
113,530	+		GFF3909	0.29	-1.1
113,530	+		GFF3909	0.29	-0.7
113,530	+		GFF3909	0.29	-0.4
113,531	-		GFF3909	0.29	+0.7
113,531	-		GFF3909	0.29	-0.2
113,531	-		GFF3909	0.29	-1.0
113,531	-		GFF3909	0.29	-0.4
113,531	-		GFF3909	0.29	+0.3
113,531	-		GFF3909	0.29	-0.6
113,531	-		GFF3909	0.29	+0.8
113,531	-		GFF3909	0.29	-1.1
113,699	-		GFF3909	0.35	+0.5
113,749	+		GFF3909	0.36	+0.4
113,750	-		GFF3909	0.36	+0.1
113,750	-		GFF3909	0.36	-0.0
113,752	+		GFF3909	0.37	-0.7
113,752	+		GFF3909	0.37	-0.1
113,752	+		GFF3909	0.37	-0.5
113,752	+		GFF3909	0.37	+0.5
113,752	+		GFF3909	0.37	+0.0
113,752	+		GFF3909	0.37	-0.4
113,752	+		GFF3909	0.37	-1.2
113,752	+		GFF3909	0.37	-1.2
113,752	+		GFF3909	0.37	+0.4
113,752	+		GFF3909	0.37	-0.4
113,752	+		GFF3909	0.37	+0.4
113,753	-		GFF3909	0.37	-1.2
113,753	-		GFF3909	0.37	-1.1
113,753	-		GFF3909	0.37	-0.8
113,753	-		GFF3909	0.37	-0.4
113,753	-		GFF3909	0.37	-0.9
113,753	-		GFF3909	0.37	-0.3
113,753	-		GFF3909	0.37	-0.7
113,753	-		GFF3909	0.37	-1.4
113,800	+		GFF3909	0.38	+0.1
113,801	-		GFF3909	0.38	+0.9
113,801	-		GFF3909	0.38	+0.9
113,801	-		GFF3909	0.38	+0.2
113,914	+		GFF3909	0.42	+0.8
113,914	+		GFF3909	0.42	+0.8
113,914	+		GFF3909	0.42	-1.0
113,915	-		GFF3909	0.42	-0.9
113,915	-		GFF3909	0.42	-0.3
113,915	-		GFF3909	0.42	-0.7
113,974	+		GFF3909	0.44	-0.7
114,305	-		GFF3909	0.56	-1.0
114,331	+		GFF3909	0.57	-0.6
114,332	-		GFF3909	0.57	-0.2
114,332	-		GFF3909	0.57	+0.1
114,332	-		GFF3909	0.57	+0.0
114,352	+		GFF3909	0.57	-0.2
114,353	-		GFF3909	0.57	-0.7
114,353	-		GFF3909	0.57	-0.8
114,365	-		GFF3909	0.58	+0.6
114,616	+		GFF3909	0.67	-0.4
114,616	+		GFF3909	0.67	-0.3
114,616	+		GFF3909	0.67	-2.5
114,616	+		GFF3909	0.67	-0.5
114,616	+		GFF3909	0.67	+0.0
114,616	+		GFF3909	0.67	-2.2
114,616	+		GFF3909	0.67	-1.2
114,617	-		GFF3909	0.67	+0.2
114,617	-		GFF3909	0.67	-0.2
114,617	-		GFF3909	0.67	-0.5
114,617	-		GFF3909	0.67	-0.9
114,617	-		GFF3909	0.67	-0.4
114,617	-		GFF3909	0.67	+0.2
114,668	-		GFF3909	0.68	-1.6
114,700	+		GFF3909	0.70	+0.5
114,700	+		GFF3909	0.70	+1.0
114,701	-		GFF3909	0.70	+0.1
114,701	-		GFF3909	0.70	-0.2
114,701	-		GFF3909	0.70	-0.2
114,766	+		GFF3909	0.72	+0.4
114,766	+		GFF3909	0.72	-0.2
114,766	+		GFF3909	0.72	-0.9
114,766	+		GFF3909	0.72	-0.6
114,767	-		GFF3909	0.72	-0.4
114,787	+		GFF3909	0.73	-1.0
114,787	+		GFF3909	0.73	-1.4
114,787	+		GFF3909	0.73	-0.5
114,787	+		GFF3909	0.73	-2.1
114,787	+		GFF3909	0.73	-0.3
114,787	+		GFF3909	0.73	+0.0
114,787	+		GFF3909	0.73	-0.3
114,787	+		GFF3909	0.73	-0.7
114,787	+		GFF3909	0.73	-1.1
114,787	+		GFF3909	0.73	-0.2
114,788	-		GFF3909	0.73	-1.3
114,788	-		GFF3909	0.73	-0.1
114,788	-		GFF3909	0.73	+0.3
114,788	-		GFF3909	0.73	-0.7
114,788	-		GFF3909	0.73	+0.0
114,788	-		GFF3909	0.73	-1.7
114,788	-		GFF3909	0.73	+0.6
114,788	-		GFF3909	0.73	-0.6
114,788	-		GFF3909	0.73	-0.7
114,788	-		GFF3909	0.73	-0.8
114,788	-		GFF3909	0.73	-2.2
114,788	-		GFF3909	0.73	-1.6
114,788	-		GFF3909	0.73	+2.4
114,991	+		GFF3909	0.80	-0.7
114,991	+		GFF3909	0.80	-0.6
114,991	+		GFF3909	0.80	+0.8
114,991	+		GFF3909	0.80	-0.7
114,991	+		GFF3909	0.80	-0.0
114,992	-		GFF3909	0.80	-0.3
114,992	-		GFF3909	0.80	-0.6
115,144	+		GFF3909	0.85	-0.4
115,144	+		GFF3909	0.85	+0.3
115,144	+		GFF3909	0.85	-0.1
115,144	+		GFF3909	0.85	-0.7
115,145	-		GFF3909	0.85	+0.0
115,145	-		GFF3909	0.85	-2.7
115,162	+		GFF3909	0.86	-0.5
115,162	+		GFF3909	0.86	-0.5
115,162	+		GFF3909	0.86	-0.8
115,162	+		GFF3909	0.86	+0.1
115,162	+		GFF3909	0.86	+0.9
115,162	+		GFF3909	0.86	-0.8
115,163	-		GFF3909	0.86	-0.1
115,163	-		GFF3909	0.86	-1.0
115,163	-		GFF3909	0.86	+0.5
115,163	-		GFF3909	0.86	-0.6
115,163	-		GFF3909	0.86	+0.0
115,163	-		GFF3909	0.86	-0.5
115,163	-		GFF3909	0.86	-0.9
115,163	-		GFF3909	0.86	-0.2
115,163	-		GFF3909	0.86	-0.9
115,163	-		GFF3909	0.86	-0.4
115,163	-		GFF3909	0.86	-1.1
115,163	-		GFF3909	0.86	+0.0
115,163	-		GFF3909	0.86	+0.6
115,207	+		GFF3909	0.87	+0.2
115,207	+		GFF3909	0.87	-2.1
115,207	+		GFF3909	0.87	-0.7
115,207	+		GFF3909	0.87	-1.4
115,293	+				-1.0
115,294	-				-0.5
115,294	-				-1.0
115,516	+				-0.2
115,516	+				-0.5
115,516	+				+0.4
115,517	-				-1.7
115,517	-				-1.0
115,517	-				-0.0
115,517	-				-1.0
115,519	+				-1.2
115,519	+				-1.1
115,519	+				-0.4
115,519	+				+1.0
115,519	+				-0.3
115,519	+				+0.3
115,519	+				-2.1
115,520	-				+1.4
115,520	-				+0.0
115,520	-				+1.6
115,520	-				+0.4
115,520	-				-0.4
115,520	-				+0.3
115,520	-				+0.1
115,520	-				+1.0
115,520	-				-0.4
115,591	+				-1.1
115,592	-				-0.4
115,592	-				-1.9
115,592	-				-0.4
115,592	-				-0.9
115,592	-				-0.8
115,825	+		GFF3910	0.16	+1.4
115,825	+		GFF3910	0.16	-0.8
115,826	-		GFF3910	0.16	-1.6
115,903	+		GFF3910	0.21	-1.4
115,904	-		GFF3910	0.21	-0.2
116,047	+		GFF3910	0.31	+0.2
116,047	+		GFF3910	0.31	-0.2
116,047	+		GFF3910	0.31	-1.4
116,047	+		GFF3910	0.31	+0.6
116,047	+		GFF3910	0.31	+0.2
116,047	+		GFF3910	0.31	+0.5
116,048	-		GFF3910	0.31	-0.3
116,048	-		GFF3910	0.31	-0.4
116,048	-		GFF3910	0.31	-0.0
116,048	-		GFF3910	0.31	+1.2
116,048	-		GFF3910	0.31	-1.2
116,048	-		GFF3910	0.31	+0.6
116,254	+		GFF3910	0.45	-0.1
116,254	+		GFF3910	0.45	-0.1
116,254	+		GFF3910	0.45	-1.0
116,275	+		GFF3910	0.47	-0.9
116,275	+		GFF3910	0.47	-0.3
116,276	-		GFF3910	0.47	-1.1
116,276	-		GFF3910	0.47	+0.6
116,276	-		GFF3910	0.47	-0.2
116,276	-		GFF3910	0.47	-0.3
116,434	+		GFF3910	0.58	+1.0
116,434	+		GFF3910	0.58	-0.2
116,435	-		GFF3910	0.58	-1.4
116,435	-		GFF3910	0.58	-0.1
116,481	+		GFF3910	0.61	-1.2