Strain Fitness in Variovorax sp. SCN45 around GFF3903

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
103,777	+				+0.4
103,777	+				+1.6
103,777	+				-1.0
103,777	+				-0.5
103,777	+				+1.2
103,778	-				+0.8
103,778	-				+0.4
103,816	+				+0.4
103,816	+				-0.3
103,816	+				+0.4
103,817	-				-0.9
104,092	+		GFF3902	0.38	-1.0
104,092	+		GFF3902	0.38	-0.4
104,092	+		GFF3902	0.38	+0.1
104,092	+		GFF3902	0.38	+0.0
104,092	+		GFF3902	0.38	-0.2
104,093	-		GFF3902	0.38	+0.4
104,093	-		GFF3902	0.38	-0.1
104,093	-		GFF3902	0.38	-0.9
104,093	-		GFF3902	0.38	-1.3
104,311	+		GFF3902	0.66	-0.6
104,314	+		GFF3902	0.66	-0.4
104,314	+		GFF3902	0.66	+1.6
104,314	+		GFF3902	0.66	-0.7
104,314	+		GFF3902	0.66	-1.1
104,314	+		GFF3902	0.66	+1.0
104,314	+		GFF3902	0.66	+0.6
104,314	+		GFF3902	0.66	-1.8
104,315	-		GFF3902	0.66	-0.1
104,315	-		GFF3902	0.66	-0.0
104,315	-		GFF3902	0.66	-0.7
104,315	-		GFF3902	0.66	+0.7
104,365	+		GFF3902	0.72	-0.8
104,365	+		GFF3902	0.72	-1.7
104,365	+		GFF3902	0.72	+0.4
104,365	+		GFF3902	0.72	-2.1
104,365	+		GFF3902	0.72	-0.2
104,365	+		GFF3902	0.72	+0.0
104,365	+		GFF3902	0.72	-0.5
104,365	+		GFF3902	0.72	-0.2
104,366	-		GFF3902	0.72	-0.4
104,366	-		GFF3902	0.72	-0.7
104,366	-		GFF3902	0.72	-0.5
104,366	-		GFF3902	0.72	-0.6
104,366	-		GFF3902	0.72	-0.2
104,366	-		GFF3902	0.72	+1.6
104,366	-		GFF3902	0.72	-1.0
104,366	-		GFF3902	0.72	-0.8
104,366	-		GFF3902	0.72	+0.4
104,366	-		GFF3902	0.72	-0.5
104,366	-		GFF3902	0.72	-0.2
104,467	+		GFF3902	0.85	-0.5
104,467	+		GFF3902	0.85	-1.2
104,468	-		GFF3902	0.85	+0.5
104,468	-		GFF3902	0.85	-0.5
104,468	-		GFF3902	0.85	-0.7
104,468	-		GFF3902	0.85	-1.0
104,479	+		GFF3902	0.87	+0.3
104,480	-		GFF3902	0.87	-0.7
104,480	-		GFF3902	0.87	+0.4
104,661	+				-0.3
104,661	+				+0.5
104,661	+				-0.4
104,662	-				-0.3
104,662	-				+0.4
104,662	-				-0.6
104,662	-				+0.8
104,662	-				-0.4
104,662	-				-0.9
105,112	-		GFF3903	0.53	-0.1
105,228	+		GFF3903	0.65	+0.3
105,228	+		GFF3903	0.65	-0.3
105,229	-		GFF3903	0.65	-1.0
105,229	-		GFF3903	0.65	-0.6
105,229	-		GFF3903	0.65	-1.0
105,421	+		GFF3903	0.84	+0.4
105,421	+		GFF3903	0.84	+0.1
105,421	+		GFF3903	0.84	-0.6
105,421	+		GFF3903	0.84	-0.6
105,421	+		GFF3903	0.84	-1.6
105,422	-		GFF3903	0.84	+0.1
105,422	-		GFF3903	0.84	+0.3
105,422	-		GFF3903	0.84	-0.7
105,422	-		GFF3903	0.84	-0.8
105,486	+				-0.6
105,487	-				+0.1
105,487	-				-0.8
105,591	+				-2.1
105,961	+		GFF3904	0.60	-0.4
105,961	+		GFF3904	0.60	-1.5
105,962	-		GFF3904	0.60	-0.4
106,186	+				-0.2
106,186	+				+1.3
106,186	+				+0.0
106,187	-				-0.4
106,187	-				+0.6
106,187	-				-0.5
106,187	-				+0.0
106,187	-				-1.3
106,187	-				-0.7
106,192	+				+0.5
106,281	+				+0.9
106,281	+				-0.3
106,281	+				-0.7
106,282	-				+0.0
106,420	-				-0.2
106,467	+				+0.2