Strain Fitness in Variovorax sp. SCN45 around GFF3765

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3763 and GFF3764 are separated by 6 nucleotidesGFF3764 and GFF3765 overlap by 4 nucleotidesGFF3765 and GFF3766 overlap by 11 nucleotidesGFF3766 and GFF3767 overlap by 14 nucleotides GFF3763 - no description, at 255,497 to 256,015 GFF3763 GFF3764 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 256,022 to 256,753 GFF3764 GFF3765 - no description, at 256,750 to 257,751 GFF3765 GFF3766 - hypothetical protein, at 257,741 to 258,472 GFF3766 GFF3767 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 258,459 to 259,235 GFF3767 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.113 kb on - strand, within GFF3764at 256.211 kb on + strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.777 kb on + strandat 256.777 kb on + strandat 256.864 kb on + strand, within GFF3765at 256.909 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.969 kb on + strand, within GFF3765at 256.970 kb on - strand, within GFF3765at 256.985 kb on - strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.053 kb on + strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.054 kb on - strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.179 kb on + strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.180 kb on - strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.248 kb on + strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.249 kb on - strand, within GFF3765at 257.365 kb on + strand, within GFF3765at 257.366 kb on - strand, within GFF3765at 257.476 kb on + strand, within GFF3765at 257.554 kb on + strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.555 kb on - strand, within GFF3765at 257.592 kb on - strand, within GFF3765at 257.638 kb on + strand, within GFF3765at 257.639 kb on - strand, within GFF3765at 257.677 kb on + strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.678 kb on - strandat 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.861 kb on + strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 257.862 kb on - strand, within GFF3766at 258.218 kb on + strand, within GFF3766at 258.347 kb on + strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.348 kb on - strand, within GFF3766at 258.380 kb on + strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.381 kb on - strand, within GFF3766at 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.404 kb on + strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strandat 258.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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255,752 + GFF3763 0.49 +0.8
255,752 + GFF3763 0.49 -0.8
255,752 + GFF3763 0.49 -1.2
255,752 + GFF3763 0.49 -0.6
255,752 + GFF3763 0.49 -1.3
255,752 + GFF3763 0.49 -0.1
255,752 + GFF3763 0.49 +0.8
255,753 - GFF3763 0.49 -0.1
255,753 - GFF3763 0.49 -0.2
255,753 - GFF3763 0.49 -0.1
255,753 - GFF3763 0.49 +0.4
255,753 - GFF3763 0.49 -0.2
255,753 - GFF3763 0.49 +1.8
255,753 - GFF3763 0.49 -1.4
255,770 + GFF3763 0.53 -1.4
255,770 + GFF3763 0.53 -0.3
255,770 + GFF3763 0.53 +0.1
255,771 - GFF3763 0.53 -0.7
255,771 - GFF3763 0.53 +0.8
255,771 - GFF3763 0.53 +0.6
255,771 - GFF3763 0.53 -0.7
256,040 + +0.3
256,040 + +0.9
256,040 + +0.1
256,040 + +1.8
256,041 - -0.4
256,041 - +0.4
256,041 - +0.4
256,041 - -0.6
256,041 - +1.1
256,112 + GFF3764 0.12 -1.1
256,112 + GFF3764 0.12 +0.2
256,112 + GFF3764 0.12 -0.1
256,113 - GFF3764 0.12 +0.4
256,211 + GFF3764 0.26 +1.5
256,212 - GFF3764 0.26 +0.2
256,212 - GFF3764 0.26 -0.9
256,212 - GFF3764 0.26 +1.6
256,212 - GFF3764 0.26 +0.0
256,212 - GFF3764 0.26 -0.8
256,232 + GFF3764 0.29 +0.8
256,232 + GFF3764 0.29 -0.2
256,233 - GFF3764 0.29 -0.5
256,233 - GFF3764 0.29 -0.7
256,233 - GFF3764 0.29 -1.1
256,233 - GFF3764 0.29 -0.6
256,233 - GFF3764 0.29 -0.2
256,777 + -0.6
256,777 + +1.5
256,864 + GFF3765 0.11 +0.5
256,909 + GFF3765 0.16 -0.2
256,969 + GFF3765 0.22 -0.4
256,969 + GFF3765 0.22 +0.6
256,969 + GFF3765 0.22 +0.2
256,969 + GFF3765 0.22 +0.2
256,969 + GFF3765 0.22 +0.1
256,969 + GFF3765 0.22 -0.2
256,969 + GFF3765 0.22 +0.6
256,970 - GFF3765 0.22 +1.2
256,985 - GFF3765 0.23 +0.7
257,053 + GFF3765 0.30 +0.4
257,053 + GFF3765 0.30 -0.3
257,053 + GFF3765 0.30 +0.9
257,053 + GFF3765 0.30 -0.2
257,054 - GFF3765 0.30 -0.9
257,054 - GFF3765 0.30 +0.4
257,179 + GFF3765 0.43 +0.2
257,179 + GFF3765 0.43 -0.5
257,179 + GFF3765 0.43 -0.1
257,180 - GFF3765 0.43 -0.5
257,180 - GFF3765 0.43 -0.7
257,180 - GFF3765 0.43 -1.0
257,180 - GFF3765 0.43 -0.8
257,180 - GFF3765 0.43 -0.3
257,180 - GFF3765 0.43 +0.8
257,248 + GFF3765 0.50 +0.4
257,248 + GFF3765 0.50 +1.0
257,248 + GFF3765 0.50 +0.6
257,248 + GFF3765 0.50 +0.5
257,248 + GFF3765 0.50 +1.3
257,249 - GFF3765 0.50 -0.3
257,249 - GFF3765 0.50 -1.0
257,249 - GFF3765 0.50 -0.8
257,365 + GFF3765 0.61 -0.3
257,366 - GFF3765 0.61 -0.5
257,476 + GFF3765 0.72 +0.8
257,554 + GFF3765 0.80 +0.3
257,555 - GFF3765 0.80 +0.1
257,555 - GFF3765 0.80 -1.2
257,592 - GFF3765 0.84 -0.5
257,638 + GFF3765 0.89 -2.0
257,639 - GFF3765 0.89 +1.2
257,677 + -0.1
257,678 - +0.4
257,678 - +0.2
257,678 - -1.0
257,678 - -0.3
257,678 - -1.9
257,678 - +0.6
257,678 - +0.8
257,861 + GFF3766 0.16 +0.1
257,861 + GFF3766 0.16 -0.5
257,861 + GFF3766 0.16 -0.9
257,861 + GFF3766 0.16 -0.1
257,861 + GFF3766 0.16 +0.0
257,861 + GFF3766 0.16 -0.3
257,861 + GFF3766 0.16 +0.2
257,862 - GFF3766 0.17 -0.7
257,862 - GFF3766 0.17 +0.0
257,862 - GFF3766 0.17 +1.0
257,862 - GFF3766 0.17 -0.4
257,862 - GFF3766 0.17 +0.4
257,862 - GFF3766 0.17 -0.1
257,862 - GFF3766 0.17 +1.2
258,218 + GFF3766 0.65 -1.6
258,347 + GFF3766 0.83 -0.1
258,348 - GFF3766 0.83 +0.5
258,348 - GFF3766 0.83 -0.1
258,348 - GFF3766 0.83 -0.7
258,348 - GFF3766 0.83 -1.1
258,380 + GFF3766 0.87 -0.7
258,381 - GFF3766 0.87 +0.6
258,381 - GFF3766 0.87 -0.2
258,404 + -1.2
258,404 + +0.0
258,404 + -0.2
258,404 + -0.5
258,404 + +1.5
258,404 + -0.3
258,404 + +0.7
258,404 + -0.2
258,405 - -0.2
258,405 - -0.4
258,405 - +0.2
258,405 - -0.8
258,405 - -0.1

Or see this region's nucleotide sequence