Strain Fitness in Variovorax sp. SCN45 around GFF3664

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3662 and GFF3663 are separated by 79 nucleotidesGFF3663 and GFF3664 are separated by 73 nucleotidesGFF3664 and GFF3665 are separated by 48 nucleotidesGFF3665 and GFF3666 are separated by 42 nucleotides GFF3662 - hypothetical protein, at 164,272 to 164,589 GFF3662 GFF3663 - Permease of the drug/metabolite transporter (DMT) superfamily, at 164,669 to 165,514 GFF3663 GFF3664 - Transcriptional regulator, AraC family, at 165,588 to 166,295 GFF3664 GFF3665 - no description, at 166,344 to 166,898 GFF3665 GFF3666 - Inner membrane protein YbiR, putative anion permease, at 166,941 to 168,104 GFF3666 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.793 kb on + strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 164.794 kb on - strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.030 kb on + strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.031 kb on - strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.078 kb on + strand, within GFF3663at 165.079 kb on - strand, within GFF3663at 165.079 kb on - strand, within GFF3663at 165.079 kb on - strand, within GFF3663at 165.079 kb on - strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.237 kb on + strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.238 kb on - strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.315 kb on + strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.316 kb on - strand, within GFF3663at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.976 kb on + strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 165.977 kb on - strand, within GFF3664at 166.446 kb on + strand, within GFF3665at 166.446 kb on + strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.447 kb on - strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.552 kb on + strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.553 kb on - strand, within GFF3665at 166.645 kb on + strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.646 kb on - strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.831 kb on + strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 166.832 kb on - strand, within GFF3665at 167.131 kb on + strand, within GFF3666at 167.132 kb on - strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.197 kb on + strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666at 167.198 kb on - strand, within GFF3666

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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164,793 + GFF3663 0.15 +0.8
164,793 + GFF3663 0.15 +2.4
164,793 + GFF3663 0.15 +0.4
164,793 + GFF3663 0.15 -1.1
164,793 + GFF3663 0.15 +0.8
164,793 + GFF3663 0.15 +0.7
164,793 + GFF3663 0.15 +0.5
164,793 + GFF3663 0.15 -1.2
164,793 + GFF3663 0.15 -0.3
164,793 + GFF3663 0.15 -0.8
164,793 + GFF3663 0.15 -1.0
164,793 + GFF3663 0.15 -1.0
164,794 - GFF3663 0.15 -0.5
164,794 - GFF3663 0.15 -0.6
164,794 - GFF3663 0.15 -0.2
164,794 - GFF3663 0.15 -0.1
164,794 - GFF3663 0.15 -0.1
164,794 - GFF3663 0.15 -0.1
164,794 - GFF3663 0.15 +1.2
164,794 - GFF3663 0.15 -0.3
164,794 - GFF3663 0.15 -1.4
164,794 - GFF3663 0.15 -0.7
164,794 - GFF3663 0.15 +0.5
164,794 - GFF3663 0.15 -0.0
164,794 - GFF3663 0.15 +1.2
164,794 - GFF3663 0.15 +0.2
164,794 - GFF3663 0.15 -0.6
164,794 - GFF3663 0.15 -0.6
165,030 + GFF3663 0.43 -1.2
165,030 + GFF3663 0.43 -0.8
165,030 + GFF3663 0.43 +0.3
165,030 + GFF3663 0.43 -0.8
165,030 + GFF3663 0.43 +0.3
165,030 + GFF3663 0.43 +0.4
165,030 + GFF3663 0.43 +0.6
165,030 + GFF3663 0.43 -0.2
165,031 - GFF3663 0.43 +1.8
165,031 - GFF3663 0.43 +0.8
165,031 - GFF3663 0.43 -0.7
165,031 - GFF3663 0.43 +1.0
165,031 - GFF3663 0.43 -0.7
165,031 - GFF3663 0.43 -0.2
165,031 - GFF3663 0.43 +0.2
165,031 - GFF3663 0.43 -0.4
165,031 - GFF3663 0.43 +1.1
165,031 - GFF3663 0.43 -1.8
165,078 + GFF3663 0.48 +0.2
165,078 + GFF3663 0.48 +0.2
165,078 + GFF3663 0.48 -0.3
165,078 + GFF3663 0.48 -0.8
165,078 + GFF3663 0.48 -0.7
165,078 + GFF3663 0.48 -0.5
165,078 + GFF3663 0.48 +1.5
165,079 - GFF3663 0.48 +0.4
165,079 - GFF3663 0.48 -0.5
165,079 - GFF3663 0.48 -0.2
165,079 - GFF3663 0.48 -0.0
165,237 + GFF3663 0.67 +0.0
165,237 + GFF3663 0.67 -0.1
165,237 + GFF3663 0.67 -0.6
165,237 + GFF3663 0.67 -0.2
165,237 + GFF3663 0.67 +1.2
165,237 + GFF3663 0.67 -0.3
165,237 + GFF3663 0.67 +0.6
165,237 + GFF3663 0.67 -0.8
165,237 + GFF3663 0.67 -0.1
165,238 - GFF3663 0.67 -0.0
165,238 - GFF3663 0.67 +1.8
165,238 - GFF3663 0.67 +0.2
165,238 - GFF3663 0.67 -0.5
165,238 - GFF3663 0.67 -0.1
165,238 - GFF3663 0.67 +0.3
165,238 - GFF3663 0.67 +0.4
165,238 - GFF3663 0.67 -0.3
165,238 - GFF3663 0.67 +0.1
165,238 - GFF3663 0.67 +0.7
165,315 + GFF3663 0.76 +0.1
165,315 + GFF3663 0.76 -1.1
165,315 + GFF3663 0.76 +0.2
165,315 + GFF3663 0.76 +0.0
165,315 + GFF3663 0.76 +1.3
165,315 + GFF3663 0.76 -0.3
165,315 + GFF3663 0.76 +0.2
165,315 + GFF3663 0.76 -0.5
165,315 + GFF3663 0.76 -0.1
165,315 + GFF3663 0.76 +0.1
165,315 + GFF3663 0.76 -1.0
165,315 + GFF3663 0.76 -0.0
165,315 + GFF3663 0.76 -0.3
165,315 + GFF3663 0.76 +0.2
165,316 - GFF3663 0.76 -1.2
165,316 - GFF3663 0.76 +0.1
165,316 - GFF3663 0.76 -0.1
165,316 - GFF3663 0.76 -0.4
165,316 - GFF3663 0.76 +0.2
165,316 - GFF3663 0.76 +0.3
165,316 - GFF3663 0.76 -1.2
165,316 - GFF3663 0.76 -0.0
165,316 - GFF3663 0.76 -0.1
165,316 - GFF3663 0.76 +0.2
165,316 - GFF3663 0.76 +0.5
165,316 - GFF3663 0.76 -0.7
165,316 - GFF3663 0.76 -0.0
165,316 - GFF3663 0.76 -0.8
165,316 - GFF3663 0.76 +0.7
165,316 - GFF3663 0.76 +0.1
165,316 - GFF3663 0.76 -0.1
165,976 + GFF3664 0.55 +1.6
165,976 + GFF3664 0.55 +1.1
165,976 + GFF3664 0.55 -0.7
165,976 + GFF3664 0.55 +1.2
165,976 + GFF3664 0.55 +0.9
165,976 + GFF3664 0.55 -1.8
165,976 + GFF3664 0.55 +0.1
165,977 - GFF3664 0.55 -0.6
165,977 - GFF3664 0.55 -0.5
165,977 - GFF3664 0.55 -0.5
165,977 - GFF3664 0.55 +0.1
166,446 + GFF3665 0.18 -0.7
166,446 + GFF3665 0.18 +0.0
166,447 - GFF3665 0.19 +1.0
166,447 - GFF3665 0.19 +0.6
166,447 - GFF3665 0.19 -0.9
166,552 + GFF3665 0.37 +0.9
166,552 + GFF3665 0.37 -0.9
166,552 + GFF3665 0.37 +0.1
166,552 + GFF3665 0.37 +0.5
166,552 + GFF3665 0.37 +0.8
166,552 + GFF3665 0.37 -0.6
166,552 + GFF3665 0.37 +0.0
166,552 + GFF3665 0.37 -0.1
166,552 + GFF3665 0.37 -1.1
166,553 - GFF3665 0.38 +0.0
166,553 - GFF3665 0.38 +0.3
166,553 - GFF3665 0.38 +1.0
166,553 - GFF3665 0.38 -2.6
166,553 - GFF3665 0.38 -0.1
166,553 - GFF3665 0.38 -0.6
166,645 + GFF3665 0.54 -0.8
166,646 - GFF3665 0.54 +1.4
166,646 - GFF3665 0.54 -0.8
166,646 - GFF3665 0.54 -0.0
166,831 + GFF3665 0.88 +4.1
166,831 + GFF3665 0.88 -0.8
166,831 + GFF3665 0.88 +1.8
166,831 + GFF3665 0.88 +0.4
166,831 + GFF3665 0.88 +0.5
166,831 + GFF3665 0.88 -1.3
166,831 + GFF3665 0.88 -0.5
166,832 - GFF3665 0.88 -0.9
166,832 - GFF3665 0.88 +1.2
166,832 - GFF3665 0.88 -0.2
166,832 - GFF3665 0.88 -0.5
166,832 - GFF3665 0.88 -0.3
166,832 - GFF3665 0.88 -0.8
166,832 - GFF3665 0.88 -0.0
166,832 - GFF3665 0.88 -0.5
166,832 - GFF3665 0.88 +0.0
167,131 + GFF3666 0.16 -1.2
167,132 - GFF3666 0.16 -0.4
167,197 + GFF3666 0.22 -0.2
167,197 + GFF3666 0.22 -0.3
167,197 + GFF3666 0.22 -0.4
167,197 + GFF3666 0.22 +0.8
167,198 - GFF3666 0.22 -0.6
167,198 - GFF3666 0.22 -0.3
167,198 - GFF3666 0.22 -0.1

Or see this region's nucleotide sequence