Strain Fitness in Variovorax sp. SCN45 around GFF3657

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3655 and GFF3656 are separated by 111 nucleotidesGFF3656 and GFF3657 are separated by 124 nucleotidesGFF3657 and GFF3658 overlap by 7 nucleotidesGFF3658 and GFF3659 overlap by 1 nucleotides GFF3655 - no description, at 159,056 to 159,433 GFF3655 GFF3656 - hypothetical protein, at 159,545 to 160,009 GFF3656 GFF3657 - Mlr5572 protein, at 160,134 to 160,526 GFF3657 GFF3658 - hypothetical protein, at 160,520 to 160,906 GFF3658 GFF3659 - Two-component transcriptional response regulator, OmpR family, at 160,906 to 161,649 GFF3659 Position (kb) 160 161Strain fitness (log2 ratio) -2 -1 0 1 2 3at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.140 kb on + strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.141 kb on - strand, within GFF3655at 159.431 kb on + strandat 159.432 kb on - strandat 159.450 kb on + strandat 159.451 kb on - strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.565 kb on + strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.566 kb on - strandat 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.926 kb on + strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 159.927 kb on - strand, within GFF3656at 160.008 kb on - strandat 160.008 kb on - strandat 160.074 kb on + strandat 160.075 kb on - strandat 160.075 kb on - strandat 160.075 kb on - strandat 160.222 kb on - strand, within GFF3657at 160.222 kb on - strand, within GFF3657at 160.230 kb on + strand, within GFF3657at 160.230 kb on + strand, within GFF3657at 160.293 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.326 kb on + strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.327 kb on - strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.344 kb on + strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.345 kb on - strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.467 kb on + strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.468 kb on - strand, within GFF3657at 160.625 kb on + strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.626 kb on - strand, within GFF3658at 160.838 kb on + strand, within GFF3658at 160.838 kb on + strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 160.839 kb on - strand, within GFF3658at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.014 kb on + strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.015 kb on - strand, within GFF3659at 161.092 kb on + strand, within GFF3659at 161.093 kb on - strand, within GFF3659at 161.093 kb on - strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.248 kb on + strand, within GFF3659at 161.249 kb on - strand, within GFF3659at 161.249 kb on - strand, within GFF3659at 161.249 kb on - strand, within GFF3659

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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159,140 + GFF3655 0.22 -0.8
159,140 + GFF3655 0.22 -0.0
159,140 + GFF3655 0.22 -1.2
159,140 + GFF3655 0.22 -0.7
159,140 + GFF3655 0.22 -0.6
159,140 + GFF3655 0.22 +0.1
159,141 - GFF3655 0.22 -1.6
159,141 - GFF3655 0.22 +2.8
159,141 - GFF3655 0.22 +0.4
159,141 - GFF3655 0.22 -1.2
159,141 - GFF3655 0.22 -0.8
159,141 - GFF3655 0.22 -0.4
159,141 - GFF3655 0.22 +0.8
159,431 + +0.1
159,432 - +1.0
159,450 + +0.1
159,451 - -0.5
159,565 + -0.0
159,565 + -0.1
159,565 + -0.9
159,565 + -0.7
159,565 + +0.2
159,565 + +1.1
159,565 + -0.5
159,565 + -0.2
159,566 - +0.0
159,566 - +1.0
159,566 - -0.2
159,566 - +0.4
159,566 - -1.8
159,926 + GFF3656 0.82 -1.1
159,926 + GFF3656 0.82 +0.9
159,926 + GFF3656 0.82 +1.2
159,926 + GFF3656 0.82 -1.2
159,926 + GFF3656 0.82 +0.1
159,926 + GFF3656 0.82 -0.8
159,926 + GFF3656 0.82 -0.8
159,926 + GFF3656 0.82 -1.5
159,926 + GFF3656 0.82 +0.8
159,926 + GFF3656 0.82 -0.5
159,926 + GFF3656 0.82 +1.0
159,926 + GFF3656 0.82 -0.5
159,927 - GFF3656 0.82 +0.7
159,927 - GFF3656 0.82 +0.6
159,927 - GFF3656 0.82 -0.0
159,927 - GFF3656 0.82 -0.5
159,927 - GFF3656 0.82 -0.2
159,927 - GFF3656 0.82 -1.2
159,927 - GFF3656 0.82 +0.0
159,927 - GFF3656 0.82 -0.3
159,927 - GFF3656 0.82 -0.8
159,927 - GFF3656 0.82 +0.0
159,927 - GFF3656 0.82 +0.5
160,008 - +1.2
160,008 - -0.1
160,074 + -0.9
160,075 - -1.0
160,075 - +0.4
160,075 - -0.4
160,222 - GFF3657 0.22 -0.1
160,222 - GFF3657 0.22 -0.2
160,230 + GFF3657 0.24 +1.1
160,230 + GFF3657 0.24 +0.4
160,293 + GFF3657 0.40 -0.6
160,326 + GFF3657 0.49 -0.8
160,326 + GFF3657 0.49 -0.9
160,326 + GFF3657 0.49 +0.6
160,326 + GFF3657 0.49 +0.4
160,326 + GFF3657 0.49 +0.6
160,327 - GFF3657 0.49 -0.1
160,327 - GFF3657 0.49 +0.2
160,327 - GFF3657 0.49 -0.5
160,327 - GFF3657 0.49 +0.8
160,344 + GFF3657 0.53 +0.9
160,344 + GFF3657 0.53 +1.2
160,344 + GFF3657 0.53 -0.4
160,344 + GFF3657 0.53 -0.2
160,344 + GFF3657 0.53 +0.8
160,344 + GFF3657 0.53 +2.4
160,345 - GFF3657 0.54 +0.8
160,345 - GFF3657 0.54 -1.4
160,345 - GFF3657 0.54 +0.0
160,345 - GFF3657 0.54 -0.9
160,345 - GFF3657 0.54 -0.1
160,345 - GFF3657 0.54 -0.1
160,345 - GFF3657 0.54 +0.2
160,345 - GFF3657 0.54 +1.3
160,467 + GFF3657 0.85 -0.4
160,467 + GFF3657 0.85 +1.8
160,467 + GFF3657 0.85 -0.3
160,467 + GFF3657 0.85 +0.3
160,468 - GFF3657 0.85 -0.5
160,468 - GFF3657 0.85 -0.3
160,468 - GFF3657 0.85 +1.1
160,468 - GFF3657 0.85 -1.5
160,468 - GFF3657 0.85 +1.8
160,468 - GFF3657 0.85 +0.6
160,468 - GFF3657 0.85 +1.2
160,625 + GFF3658 0.27 +0.0
160,626 - GFF3658 0.27 +0.1
160,626 - GFF3658 0.27 -1.2
160,626 - GFF3658 0.27 -0.4
160,838 + GFF3658 0.82 -2.1
160,838 + GFF3658 0.82 -0.1
160,839 - GFF3658 0.82 -0.3
160,839 - GFF3658 0.82 +1.3
160,839 - GFF3658 0.82 -1.2
160,839 - GFF3658 0.82 +0.8
161,014 + GFF3659 0.15 -1.0
161,014 + GFF3659 0.15 -0.2
161,014 + GFF3659 0.15 -0.1
161,014 + GFF3659 0.15 +0.2
161,014 + GFF3659 0.15 -0.5
161,015 - GFF3659 0.15 -1.1
161,015 - GFF3659 0.15 +0.3
161,015 - GFF3659 0.15 -0.2
161,015 - GFF3659 0.15 -0.3
161,015 - GFF3659 0.15 +0.3
161,015 - GFF3659 0.15 +1.2
161,015 - GFF3659 0.15 +0.6
161,015 - GFF3659 0.15 +0.4
161,015 - GFF3659 0.15 -0.5
161,092 + GFF3659 0.25 -0.3
161,093 - GFF3659 0.25 +0.6
161,093 - GFF3659 0.25 +0.2
161,248 + GFF3659 0.46 -0.6
161,248 + GFF3659 0.46 -0.5
161,248 + GFF3659 0.46 +0.0
161,248 + GFF3659 0.46 -0.1
161,248 + GFF3659 0.46 +0.5
161,249 - GFF3659 0.46 -0.4
161,249 - GFF3659 0.46 -1.1
161,249 - GFF3659 0.46 -0.5

Or see this region's nucleotide sequence