Strain Fitness in Variovorax sp. SCN45 around GFF3610

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3609 and GFF3610 are separated by 268 nucleotidesGFF3610 and GFF3611 are separated by 8 nucleotides GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328 GFF3609 GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370 GFF3610 GFF3611 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 124,379 to 126,235 GFF3611 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 122.675 kb on + strand, within GFF3609at 122.676 kb on - strand, within GFF3609at 122.993 kb on + strand, within GFF3609at 122.994 kb on - strand, within GFF3609at 123.222 kb on + strand, within GFF3609at 123.223 kb on - strand, within GFF3609at 123.223 kb on - strand, within GFF3609at 123.223 kb on - strand, within GFF3609at 123.639 kb on + strandat 123.640 kb on - strandat 123.640 kb on - strandat 123.640 kb on - strandat 123.680 kb on - strand, within GFF3610at 123.703 kb on + strand, within GFF3610at 123.704 kb on - strand, within GFF3610at 123.822 kb on + strand, within GFF3610at 123.823 kb on - strand, within GFF3610at 123.912 kb on + strand, within GFF3610at 123.912 kb on + strand, within GFF3610at 123.913 kb on - strand, within GFF3610at 123.960 kb on + strand, within GFF3610at 123.960 kb on + strand, within GFF3610at 123.961 kb on - strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.966 kb on + strand, within GFF3610at 123.967 kb on - strand, within GFF3610at 123.967 kb on - strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.224 kb on + strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.225 kb on - strand, within GFF3610at 124.369 kb on - strandat 124.369 kb on - strandat 124.567 kb on - strand, within GFF3611at 124.694 kb on + strand, within GFF3611at 124.695 kb on - strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.724 kb on + strand, within GFF3611at 124.725 kb on - strand, within GFF3611at 124.725 kb on - strand, within GFF3611at 124.988 kb on + strand, within GFF3611at 124.988 kb on + strand, within GFF3611at 124.989 kb on - strand, within GFF3611at 125.048 kb on + strand, within GFF3611at 125.049 kb on - strand, within GFF3611at 125.049 kb on - strand, within GFF3611at 125.064 kb on - strand, within GFF3611at 125.150 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.162 kb on + strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.163 kb on - strand, within GFF3611at 125.273 kb on + strand, within GFF3611at 125.274 kb on - strand, within GFF3611at 125.327 kb on + strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611at 125.328 kb on - strand, within GFF3611

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
122,675 + GFF3609 0.20 +0.2
122,676 - GFF3609 0.21 +0.4
122,993 + GFF3609 0.59 -1.0
122,994 - GFF3609 0.59 +0.9
123,222 + GFF3609 0.87 -0.5
123,223 - GFF3609 0.87 +1.0
123,223 - GFF3609 0.87 -1.3
123,223 - GFF3609 0.87 -1.6
123,639 + -0.6
123,640 - +0.0
123,640 - -0.4
123,640 - -0.1
123,680 - GFF3610 0.11 -0.9
123,703 + GFF3610 0.14 -0.8
123,704 - GFF3610 0.14 +0.7
123,822 + GFF3610 0.29 +0.2
123,823 - GFF3610 0.29 +0.1
123,912 + GFF3610 0.41 -0.6
123,912 + GFF3610 0.41 +0.8
123,913 - GFF3610 0.41 +1.0
123,960 + GFF3610 0.47 -0.2
123,960 + GFF3610 0.47 +0.4
123,961 - GFF3610 0.47 +0.7
123,966 + GFF3610 0.48 +0.0
123,966 + GFF3610 0.48 -2.0
123,966 + GFF3610 0.48 -0.2
123,966 + GFF3610 0.48 -0.5
123,966 + GFF3610 0.48 -0.3
123,967 - GFF3610 0.48 -0.5
123,967 - GFF3610 0.48 +1.5
124,224 + GFF3610 0.81 +0.5
124,224 + GFF3610 0.81 -0.2
124,224 + GFF3610 0.81 -0.6
124,224 + GFF3610 0.81 +0.1
124,225 - GFF3610 0.81 +0.6
124,225 - GFF3610 0.81 -0.5
124,225 - GFF3610 0.81 +2.2
124,225 - GFF3610 0.81 +0.5
124,369 - -0.7
124,369 - -0.2
124,567 - GFF3611 0.10 -0.6
124,694 + GFF3611 0.17 -0.2
124,695 - GFF3611 0.17 +0.2
124,724 + GFF3611 0.19 +1.2
124,724 + GFF3611 0.19 +0.1
124,724 + GFF3611 0.19 -0.1
124,724 + GFF3611 0.19 -0.1
124,725 - GFF3611 0.19 -0.9
124,725 - GFF3611 0.19 +2.8
124,988 + GFF3611 0.33 -0.8
124,988 + GFF3611 0.33 -0.6
124,989 - GFF3611 0.33 -1.5
125,048 + GFF3611 0.36 -0.5
125,049 - GFF3611 0.36 +0.0
125,049 - GFF3611 0.36 -0.4
125,064 - GFF3611 0.37 -0.2
125,150 + GFF3611 0.42 +0.4
125,162 + GFF3611 0.42 -1.8
125,162 + GFF3611 0.42 +0.0
125,162 + GFF3611 0.42 +0.1
125,162 + GFF3611 0.42 -0.1
125,163 - GFF3611 0.42 +0.4
125,163 - GFF3611 0.42 -0.6
125,163 - GFF3611 0.42 +1.1
125,163 - GFF3611 0.42 +0.4
125,273 + GFF3611 0.48 -1.6
125,274 - GFF3611 0.48 -1.5
125,327 + GFF3611 0.51 +0.5
125,328 - GFF3611 0.51 +0.4
125,328 - GFF3611 0.51 -0.4
125,328 - GFF3611 0.51 -0.7

Or see this region's nucleotide sequence