Strain Fitness in Variovorax sp. SCN45 around GFF3591

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
101,232	+				+0.0
101,232	+				+0.8
101,232	+				-0.0
101,232	+				-0.4
101,232	+				-1.2
101,233	-				-0.1
101,233	-				-1.3
101,235	+				-0.2
101,235	+				-0.6
101,568	+		GFF3590	0.41	-0.4
101,568	+		GFF3590	0.41	-0.2
101,568	+		GFF3590	0.41	-0.4
101,568	+		GFF3590	0.41	-1.9
101,569	-		GFF3590	0.41	-1.0
101,569	-		GFF3590	0.41	-0.3
101,569	-		GFF3590	0.41	-0.2
101,569	-		GFF3590	0.41	-2.0
101,751	+		GFF3590	0.61	-0.6
101,752	-		GFF3590	0.61	+0.8
101,752	-		GFF3590	0.61	-2.1
101,752	-		GFF3590	0.61	+0.2
101,752	-		GFF3590	0.61	-1.2
101,752	-		GFF3590	0.61	-0.2
101,752	-		GFF3590	0.61	-0.6
101,753	+		GFF3590	0.61	-0.6
101,934	+		GFF3590	0.81	-0.2
101,934	+		GFF3590	0.81	-0.6
101,935	-		GFF3590	0.81	-0.9
102,409	+		GFF3591	0.22	-0.4
102,409	+		GFF3591	0.22	-0.3
102,463	+		GFF3591	0.26	-0.5
102,571	+		GFF3591	0.34	-0.0
102,571	+		GFF3591	0.34	-0.9
102,572	-		GFF3591	0.34	-0.4
102,572	-		GFF3591	0.34	+0.3
102,935	-		GFF3591	0.61	-0.1
103,168	+		GFF3591	0.78	-0.2
103,168	+		GFF3591	0.78	+0.5
103,168	+		GFF3591	0.78	-0.2
103,168	+		GFF3591	0.78	+0.2
103,168	+		GFF3591	0.78	+0.1
103,169	+		GFF3591	0.78	-0.1
103,169	-		GFF3591	0.78	-0.1
103,169	-		GFF3591	0.78	-0.2
103,169	-		GFF3591	0.78	+0.1
103,169	-		GFF3591	0.78	+0.7
103,169	-		GFF3591	0.78	+0.2
103,169	-		GFF3591	0.78	+1.4
103,169	-		GFF3591	0.78	-0.0
103,169	-		GFF3591	0.78	-1.8
103,258	+		GFF3591	0.85	+0.5
103,259	-		GFF3591	0.85	-0.8
103,300	+		GFF3591	0.88	+1.4
103,300	+		GFF3591	0.88	+0.2
103,300	+		GFF3591	0.88	+0.4
103,300	+		GFF3591	0.88	-1.2
103,300	+		GFF3591	0.88	+0.2
103,300	+		GFF3591	0.88	+1.6
103,300	+		GFF3591	0.88	+0.0
103,301	-		GFF3591	0.88	+1.4
103,301	-		GFF3591	0.88	+0.0
103,306	+		GFF3591	0.88	-0.8
103,306	+		GFF3591	0.88	-0.7
103,306	+		GFF3591	0.88	-0.6
103,307	-		GFF3591	0.88	-1.5
103,320	+		GFF3591	0.89	+0.7
103,321	-		GFF3591	0.89	+0.2
103,321	-		GFF3591	0.89	-2.0
104,120	+		GFF3592	0.44	+0.5
104,120	+		GFF3592	0.44	-0.0
104,120	+		GFF3592	0.44	-0.2
104,184	-		GFF3592	0.49	-0.8
104,345	+		GFF3592	0.61	-0.9
104,346	-		GFF3592	0.61	-0.0
104,346	-		GFF3592	0.61	-0.3
104,346	-		GFF3592	0.61	-0.2
104,346	-		GFF3592	0.61	-1.6