Strain Fitness in Variovorax sp. SCN45 around GFF331

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF330 and GFF331 are separated by 133 nucleotidesGFF331 and GFF332 are separated by 2 nucleotidesGFF332 and GFF333 are separated by 9 nucleotidesGFF333 and GFF334 overlap by 28 nucleotides GFF330 - Nucleoside ABC transporter, permease protein 1, at 364,534 to 365,601 GFF330 GFF331 - Nucleoside ABC transporter, permease protein 2, at 365,735 to 366,658 GFF331 GFF332 - hypothetical protein, at 366,661 to 367,122 GFF332 GFF333 - hypothetical protein, at 367,132 to 367,584 GFF333 GFF334 - Transcriptional regulator, AraC family, at 367,557 to 368,390 GFF334 Position (kb) 365 366 367Strain fitness (log2 ratio) -2 -1 0 1 2at 364.813 kb on + strand, within GFF330at 364.813 kb on + strand, within GFF330at 364.813 kb on + strand, within GFF330at 365.194 kb on + strand, within GFF330at 365.194 kb on + strand, within GFF330at 365.195 kb on - strand, within GFF330at 365.195 kb on - strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.353 kb on + strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.354 kb on - strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.386 kb on + strand, within GFF330at 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.512 kb on + strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.513 kb on - strandat 365.596 kb on - strandat 365.729 kb on + strandat 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.912 kb on + strand, within GFF331at 365.913 kb on - strand, within GFF331at 365.913 kb on - strand, within GFF331at 365.992 kb on + strand, within GFF331at 365.992 kb on + strand, within GFF331at 365.992 kb on + strand, within GFF331at 366.062 kb on + strand, within GFF331at 366.062 kb on + strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.063 kb on - strand, within GFF331at 366.218 kb on + strand, within GFF331at 366.219 kb on - strand, within GFF331at 366.542 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.551 kb on + strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.552 kb on - strand, within GFF331at 366.566 kb on + strandat 366.567 kb on - strandat 366.567 kb on - strandat 366.671 kb on + strandat 366.672 kb on - strandat 366.758 kb on - strand, within GFF332at 366.758 kb on - strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.835 kb on + strand, within GFF332at 366.836 kb on - strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.877 kb on + strand, within GFF332at 366.878 kb on - strand, within GFF332at 366.878 kb on - strand, within GFF332at 367.093 kb on + strandat 367.121 kb on - strandat 367.421 kb on - strand, within GFF333at 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.548 kb on + strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.549 kb on - strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.552 kb on + strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.553 kb on - strandat 367.582 kb on + strandat 367.582 kb on + strandat 367.645 kb on + strand, within GFF334at 367.646 kb on - strand, within GFF334at 367.646 kb on - strand, within GFF334

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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364,813 + GFF330 0.26 -0.4
364,813 + GFF330 0.26 +2.0
364,813 + GFF330 0.26 +0.1
365,194 + GFF330 0.62 -0.2
365,194 + GFF330 0.62 +0.5
365,195 - GFF330 0.62 -0.2
365,195 - GFF330 0.62 +0.7
365,353 + GFF330 0.77 -0.2
365,353 + GFF330 0.77 +1.3
365,353 + GFF330 0.77 -0.3
365,353 + GFF330 0.77 -0.0
365,354 - GFF330 0.77 -0.3
365,354 - GFF330 0.77 +0.8
365,354 - GFF330 0.77 +0.1
365,354 - GFF330 0.77 +0.7
365,354 - GFF330 0.77 +0.9
365,354 - GFF330 0.77 -0.0
365,354 - GFF330 0.77 +1.6
365,354 - GFF330 0.77 -1.1
365,354 - GFF330 0.77 -0.3
365,354 - GFF330 0.77 -0.1
365,386 + GFF330 0.80 -0.4
365,386 + GFF330 0.80 -0.5
365,386 + GFF330 0.80 -0.2
365,512 + -0.3
365,512 + +0.2
365,512 + -1.0
365,512 + +0.6
365,512 + -0.1
365,512 + +0.9
365,513 - -0.6
365,513 - -0.4
365,513 - +1.3
365,513 - -1.7
365,513 - +1.0
365,513 - -0.3
365,513 - -1.2
365,513 - +0.1
365,596 - -0.7
365,729 + -0.6
365,912 + GFF331 0.19 +0.5
365,912 + GFF331 0.19 +0.2
365,912 + GFF331 0.19 +0.3
365,912 + GFF331 0.19 +1.1
365,913 - GFF331 0.19 -0.6
365,913 - GFF331 0.19 -0.7
365,992 + GFF331 0.28 +0.6
365,992 + GFF331 0.28 -0.2
365,992 + GFF331 0.28 +0.1
366,062 + GFF331 0.35 -0.6
366,062 + GFF331 0.35 -0.7
366,063 - GFF331 0.35 -0.6
366,063 - GFF331 0.35 -0.2
366,063 - GFF331 0.35 +1.0
366,063 - GFF331 0.35 +0.7
366,218 + GFF331 0.52 -0.8
366,219 - GFF331 0.52 +0.0
366,542 + GFF331 0.87 +0.3
366,551 + GFF331 0.88 +0.4
366,551 + GFF331 0.88 +0.5
366,551 + GFF331 0.88 -0.0
366,551 + GFF331 0.88 -0.5
366,551 + GFF331 0.88 -0.6
366,551 + GFF331 0.88 +1.0
366,552 - GFF331 0.88 -1.0
366,552 - GFF331 0.88 +1.3
366,552 - GFF331 0.88 +0.1
366,552 - GFF331 0.88 -0.7
366,552 - GFF331 0.88 +1.0
366,566 + -0.3
366,567 - +0.2
366,567 - +1.5
366,671 + +0.8
366,672 - -0.5
366,758 - GFF332 0.21 -0.1
366,758 - GFF332 0.21 -0.1
366,835 + GFF332 0.38 -0.1
366,835 + GFF332 0.38 +0.1
366,835 + GFF332 0.38 -0.3
366,835 + GFF332 0.38 -0.1
366,835 + GFF332 0.38 -0.1
366,836 - GFF332 0.38 +0.5
366,877 + GFF332 0.47 +0.8
366,877 + GFF332 0.47 +0.1
366,877 + GFF332 0.47 -1.0
366,877 + GFF332 0.47 -0.0
366,878 - GFF332 0.47 -0.3
366,878 - GFF332 0.47 -1.2
367,093 + +1.3
367,121 - +0.3
367,421 - GFF333 0.64 +0.3
367,548 + -0.3
367,548 + +0.0
367,548 + -1.2
367,548 + +0.5
367,548 + +0.3
367,548 + +0.3
367,548 + +0.9
367,548 + +1.4
367,548 + -0.8
367,548 + +0.7
367,548 + -0.4
367,549 - -1.0
367,549 - -0.1
367,549 - -0.3
367,549 - +0.3
367,549 - +0.1
367,549 - -0.7
367,549 - -2.7
367,549 - +0.3
367,549 - +0.5
367,549 - -0.2
367,549 - +0.7
367,552 + -0.0
367,552 + -0.9
367,552 + -0.7
367,552 + -0.5
367,553 - +1.1
367,553 - -0.3
367,553 - +0.5
367,553 - -0.3
367,553 - +0.2
367,553 - +0.4
367,553 - -0.7
367,553 - -0.3
367,582 + -0.3
367,582 + -0.3
367,645 + GFF334 0.11 -0.3
367,646 - GFF334 0.11 -0.3
367,646 - GFF334 0.11 -0.7

Or see this region's nucleotide sequence