Strain Fitness in Variovorax sp. SCN45 around GFF3298

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
121,369	-				-0.1
121,576	+		GFF3297	0.22	-0.1
121,576	+		GFF3297	0.22	-1.0
121,576	+		GFF3297	0.22	-1.9
121,576	+		GFF3297	0.22	-1.0
121,576	+		GFF3297	0.22	+0.3
121,576	+		GFF3297	0.22	-0.1
121,576	+		GFF3297	0.22	+0.2
121,576	+		GFF3297	0.22	-0.8
121,577	-		GFF3297	0.22	-0.1
121,577	-		GFF3297	0.22	+0.4
121,577	-		GFF3297	0.22	-0.9
121,577	-		GFF3297	0.22	-0.6
121,577	-		GFF3297	0.22	-1.8
122,081	+				-0.2
122,113	+				+1.0
122,309	+		GFF3298	0.15	-2.0
122,309	+		GFF3298	0.15	-0.4
122,309	+		GFF3298	0.15	-1.7
122,309	+		GFF3298	0.15	+0.0
122,309	+		GFF3298	0.15	-1.8
122,310	-		GFF3298	0.15	-0.6
122,310	-		GFF3298	0.15	-0.0
122,310	-		GFF3298	0.15	+1.3
122,310	-		GFF3298	0.15	+0.1
122,310	-		GFF3298	0.15	+0.1
122,321	+		GFF3298	0.16	-0.6
122,321	+		GFF3298	0.16	-0.2
122,321	+		GFF3298	0.16	+0.3
122,322	-		GFF3298	0.16	-1.3
122,322	-		GFF3298	0.16	-0.6
122,322	-		GFF3298	0.16	-1.8
122,322	-		GFF3298	0.16	-0.5
122,322	-		GFF3298	0.16	+0.5
122,322	-		GFF3298	0.16	+0.5
122,322	-		GFF3298	0.16	+0.2
122,431	+		GFF3298	0.26	-0.1
122,431	+		GFF3298	0.26	-0.6
122,431	+		GFF3298	0.26	-1.1
122,431	+		GFF3298	0.26	-1.2
122,432	-		GFF3298	0.26	-0.8
122,432	-		GFF3298	0.26	+1.3
122,432	-		GFF3298	0.26	-0.4
122,554	+		GFF3298	0.37	-0.2
122,554	+		GFF3298	0.37	-1.6
122,554	+		GFF3298	0.37	-0.3
122,554	+		GFF3298	0.37	-0.4
122,554	+		GFF3298	0.37	-0.6
122,554	+		GFF3298	0.37	-0.3
122,554	+		GFF3298	0.37	-1.7
122,554	+		GFF3298	0.37	-0.0
122,554	+		GFF3298	0.37	-1.1
122,554	+		GFF3298	0.37	+0.9
122,554	+		GFF3298	0.37	-0.6
122,554	+		GFF3298	0.37	+0.9
122,554	+		GFF3298	0.37	-0.1
122,554	+		GFF3298	0.37	-1.0
122,554	+		GFF3298	0.37	+0.9
122,554	+		GFF3298	0.37	-0.7
122,554	+		GFF3298	0.37	-0.4
122,555	-		GFF3298	0.37	+0.4
122,555	-		GFF3298	0.37	+0.9
122,555	-		GFF3298	0.37	-0.1
122,555	-		GFF3298	0.37	-0.3
122,555	-		GFF3298	0.37	-0.4
122,555	-		GFF3298	0.37	-0.0
122,555	-		GFF3298	0.37	+1.2
122,555	-		GFF3298	0.37	-0.6
122,555	-		GFF3298	0.37	-1.0
122,555	-		GFF3298	0.37	+0.2
122,597	+		GFF3298	0.41	+0.5
122,597	+		GFF3298	0.41	+0.5
122,598	-		GFF3298	0.41	-0.8
122,598	-		GFF3298	0.41	-0.9
122,651	+		GFF3298	0.46	-0.1
122,651	+		GFF3298	0.46	+0.1
122,652	-		GFF3298	0.46	+0.5
122,652	-		GFF3298	0.46	-0.3
122,700	-		GFF3298	0.51	-0.3
122,774	+		GFF3298	0.58	-1.3
122,775	-		GFF3298	0.58	-1.1
123,011	+		GFF3298	0.79	+0.6
123,011	+		GFF3298	0.79	+0.5
123,075	-		GFF3298	0.85	-0.6
123,075	-		GFF3298	0.85	-0.0
123,075	-		GFF3298	0.85	-1.0
123,075	-		GFF3298	0.85	-0.3
123,245	+				+0.9
123,245	+				-0.7
123,246	-				-0.1
123,246	-				-0.1
123,246	-				+0.3
123,294	+				-2.0
123,306	+				-0.2
123,307	-				-0.4
123,307	-				-0.0
123,307	-				+0.4
123,307	-				+0.1
123,398	+				-0.8
123,399	-				+0.4
123,575	+		GFF3299	0.28	-0.3
123,576	-		GFF3299	0.28	+2.3
123,576	-		GFF3299	0.28	-0.9
123,576	-		GFF3299	0.28	-0.1
123,576	-		GFF3299	0.28	-0.6
123,647	+		GFF3299	0.36	-0.2
123,647	+		GFF3299	0.36	-0.2
123,648	-		GFF3299	0.36	+0.6
123,648	-		GFF3299	0.36	+0.0
123,968	+		GFF3299	0.72	-2.3
123,968	+		GFF3299	0.72	+0.0
123,968	+		GFF3299	0.72	+0.1
123,968	+		GFF3299	0.72	+0.4
123,968	+		GFF3299	0.72	-2.3
123,968	+		GFF3299	0.72	-0.7
123,968	+		GFF3299	0.72	+0.2
123,968	+		GFF3299	0.72	-0.9
123,968	+		GFF3299	0.72	+0.5
123,968	+		GFF3299	0.72	-0.5
123,968	+		GFF3299	0.72	-1.3
123,968	+		GFF3299	0.72	-0.2
123,968	+		GFF3299	0.72	+0.1
123,968	+		GFF3299	0.72	-1.1
123,968	+		GFF3299	0.72	+0.0
123,968	+		GFF3299	0.72	+0.7
123,969	-		GFF3299	0.72	-0.3
123,969	-		GFF3299	0.72	-2.0
123,969	-		GFF3299	0.72	-0.0
123,969	-		GFF3299	0.72	-0.2
123,969	-		GFF3299	0.72	+2.4
123,969	-		GFF3299	0.72	-1.3
123,969	-		GFF3299	0.72	+0.8
123,969	-		GFF3299	0.72	-1.6
123,969	-		GFF3299	0.72	-0.1
123,969	-		GFF3299	0.72	-0.1
123,969	-		GFF3299	0.72	+0.2
123,969	-		GFF3299	0.72	+0.4
123,969	-		GFF3299	0.72	-0.1
123,969	-		GFF3299	0.72	+0.1
123,969	-		GFF3299	0.72	-0.6
124,020	-		GFF3299	0.78	-0.3
124,020	-		GFF3299	0.78	+0.1
124,020	-		GFF3299	0.78	-0.6
124,061	+		GFF3299	0.82	-0.5
124,061	+		GFF3299	0.82	+0.7
124,061	+		GFF3299	0.82	+0.1
124,061	+		GFF3299	0.82	+0.1
124,062	-		GFF3299	0.82	-0.6
124,062	-		GFF3299	0.82	+0.2