Strain Fitness in Variovorax sp. SCN45 around GFF3292

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
116,183	+		GFF3289	0.83	-0.7
116,183	+		GFF3289	0.83	-0.4
116,184	-		GFF3289	0.83	-0.3
116,184	-		GFF3289	0.83	+0.2
116,184	-		GFF3289	0.83	+0.3
116,300	+				-0.9
116,300	+				-1.5
116,300	+				-0.3
116,300	+				-0.8
116,300	+				+0.7
116,300	+				-0.1
116,300	+				-0.9
116,300	+				-0.6
116,300	+				+0.0
116,300	+				+0.1
116,300	+				+1.7
116,300	+				-1.1
116,300	+				-0.3
116,300	+				-0.9
116,300	+				-0.1
116,300	+				+0.5
116,300	+				-0.6
116,300	+				+0.2
116,300	+				-0.7
116,300	+				-0.8
116,300	+				+0.2
116,301	-				-0.6
116,301	-				-0.4
116,301	-				-1.1
116,301	-				-0.7
116,301	-				+0.7
116,301	-				-0.1
116,301	-				-0.2
116,301	-				-0.8
116,301	-				-1.0
116,301	-				+0.0
116,301	-				-1.0
116,301	-				-1.3
116,301	-				+0.3
116,301	-				+0.1
116,301	-				-0.7
116,301	-				-1.1
116,301	-				-1.3
116,301	-				-0.2
116,301	-				-0.3
116,301	-				-0.7
116,322	-				-0.6
116,379	+				-0.4
116,953	+				+0.5
116,953	+				+0.5
116,953	+				-0.6
116,953	+				+1.0
116,953	+				+0.9
116,953	+				-0.7
116,954	-				+0.2
116,954	-				+0.6
116,954	-				+0.1
116,954	-				-2.5
116,954	-				-0.4
116,954	-				+0.3
116,954	-				-0.3
116,955	+				-0.6
116,955	+				-0.4
116,955	+				-1.1
116,955	+				+1.4
116,955	+				-0.5
116,955	+				+0.6
116,955	+				-0.5
116,955	+				-0.4
116,955	+				-0.6
116,955	+				+0.5
116,955	+				+1.9
116,955	+				-0.3
116,956	-				-0.0
116,956	-				-0.7
116,956	-				+0.6
116,956	-				-0.6
116,956	-				-0.5
116,956	-				-0.3
116,956	-				-1.3
116,956	-				-0.4
116,956	-				-0.1
116,956	-				-0.4
116,956	-				-0.2
116,956	-				+1.3
116,956	-				+1.2
116,956	-				+1.1
116,956	-				-0.9
116,956	-				-0.4
116,956	-				+0.3
116,956	-				-0.3
116,956	-				-0.7
117,022	+		GFF3291	0.10	+0.2
117,042	-		GFF3291	0.27	-0.1
117,042	-		GFF3291	0.27	-1.0
117,228	+		GFF3292	0.18	-0.2
117,228	+		GFF3292	0.18	-0.6
117,229	-		GFF3292	0.18	+1.1
117,229	-		GFF3292	0.18	-1.1
117,346	-		GFF3292	0.39	+0.2
117,408	+		GFF3292	0.49	-0.1
117,408	+		GFF3292	0.49	-0.1
117,408	+		GFF3292	0.49	-0.1
117,408	+		GFF3292	0.49	+0.5
117,408	+		GFF3292	0.49	+0.9
117,408	+		GFF3292	0.49	-0.3
117,408	+		GFF3292	0.49	-0.7
117,409	-		GFF3292	0.49	-0.1
117,409	-		GFF3292	0.49	-0.1
117,409	-		GFF3292	0.49	-1.0
117,409	-		GFF3292	0.49	-0.0
117,409	-		GFF3292	0.49	-0.8
117,409	-		GFF3292	0.49	-0.1
117,409	-		GFF3292	0.49	-0.6
117,409	-		GFF3292	0.49	-0.3
117,409	-		GFF3292	0.49	-1.1
117,429	+		GFF3292	0.53	-0.9
117,429	+		GFF3292	0.53	+0.4
117,429	+		GFF3292	0.53	-0.2
117,429	+		GFF3292	0.53	-0.4
117,429	+		GFF3292	0.53	-0.4
117,429	+		GFF3292	0.53	-0.4
117,429	+		GFF3292	0.53	-0.0
117,429	+		GFF3292	0.53	+0.1
117,429	+		GFF3292	0.53	-1.0
117,429	+		GFF3292	0.53	-1.7
117,429	+		GFF3292	0.53	-0.6
117,429	+		GFF3292	0.53	-0.6
117,429	+		GFF3292	0.53	-0.1
117,430	-		GFF3292	0.53	-0.5
117,430	-		GFF3292	0.53	-0.7
117,430	-		GFF3292	0.53	-0.2
117,430	-		GFF3292	0.53	-0.2
117,430	-		GFF3292	0.53	-0.8
117,430	-		GFF3292	0.53	-0.1
117,430	-		GFF3292	0.53	-0.7
117,430	-		GFF3292	0.53	-1.0
117,430	-		GFF3292	0.53	-1.7
117,430	-		GFF3292	0.53	+0.0
117,430	-		GFF3292	0.53	+0.3
117,430	-		GFF3292	0.53	-0.1
117,430	-		GFF3292	0.53	+0.8
117,430	-		GFF3292	0.53	+0.9
117,430	-		GFF3292	0.53	-0.0
117,430	-		GFF3292	0.53	-0.0
117,430	-		GFF3292	0.53	-0.1
117,442	-		GFF3292	0.55	-0.4
117,513	+		GFF3292	0.67	+0.3
117,513	+		GFF3292	0.67	-0.8
117,513	+		GFF3292	0.67	+0.2
117,513	+		GFF3292	0.67	-0.5
117,513	+		GFF3292	0.67	-0.3
117,513	+		GFF3292	0.67	-0.4
117,514	-		GFF3292	0.68	+0.2
117,514	-		GFF3292	0.68	+0.3
117,514	-		GFF3292	0.68	-1.7
117,514	-		GFF3292	0.68	-2.5
117,514	-		GFF3292	0.68	-1.4
117,514	-		GFF3292	0.68	-0.2
117,514	-		GFF3292	0.68	-0.2
117,514	-		GFF3292	0.68	-0.6
117,684	+				-0.5
117,684	+				-0.5
117,684	+				-0.7
117,684	+				-0.5
117,684	+				-1.2
117,685	-				-0.1
117,685	-				-0.5
117,690	+				-0.3
117,690	+				-1.3
117,690	+				-0.3
117,690	+				-0.5
117,690	+				-0.5
117,690	+				+1.5
117,690	+				-1.4
117,690	+				-0.3
117,690	+				-2.2
117,690	+				-1.0
117,690	+				-0.0
117,690	+				+0.9
117,691	-				+0.2
117,691	-				+0.2
117,691	-				+1.1
117,691	-				+1.0
117,726	-				+0.2
117,726	-				+0.3
117,732	+				-0.0
117,732	+				+0.5
117,732	+				-1.1
117,765	+				+1.0
117,765	+				+0.4
117,765	+				+0.5
117,765	+				-0.8
117,766	-				-0.4
117,766	-				+0.6
117,766	-				-0.4
117,766	-				+0.9
117,768	+				-0.8
117,768	+				-0.5
117,768	+				-0.6
117,768	+				-0.4
117,768	+				+0.0
117,768	+				+0.1
117,768	+				-0.8
117,769	-				-0.6
117,769	-				-1.5
117,769	-				-0.5
117,769	-				-0.4
117,769	-				+0.3
117,769	-				+1.1
117,769	-				+0.1
117,769	-				-0.4
117,769	-				+0.1
117,769	-				+0.9
117,769	-				+0.3
117,769	-				+0.2
117,769	-				+0.3
118,095	+		GFF3293	0.43	+0.0
118,095	+		GFF3293	0.43	+0.4
118,095	+		GFF3293	0.43	+0.0
118,095	+		GFF3293	0.43	-0.8
118,095	+		GFF3293	0.43	-1.3
118,096	-		GFF3293	0.43	-0.7
118,096	-		GFF3293	0.43	+0.3
118,096	-		GFF3293	0.43	-0.1
118,096	-		GFF3293	0.43	-1.0
118,096	-		GFF3293	0.43	-0.5
118,096	-		GFF3293	0.43	-0.1
118,215	+		GFF3293	0.55	+0.2
118,215	+		GFF3293	0.55	-0.1
118,216	-		GFF3293	0.55	-0.6
118,350	+		GFF3293	0.70	-2.3
118,351	-		GFF3293	0.70	-0.7
118,418	+		GFF3293	0.77	-0.3
118,418	+		GFF3293	0.77	-0.5
118,418	+		GFF3293	0.77	-0.6
118,419	-		GFF3293	0.77	-0.3
118,419	-		GFF3293	0.77	-2.0
118,419	-		GFF3293	0.77	+1.5
118,425	+		GFF3293	0.77	-0.5
118,425	+		GFF3293	0.77	-0.1
118,425	+		GFF3293	0.77	-0.2
118,425	+		GFF3293	0.77	-0.7
118,425	+		GFF3293	0.77	-0.1
118,425	+		GFF3293	0.77	-0.9
118,425	+		GFF3293	0.77	+0.8
118,425	+		GFF3293	0.77	-0.4
118,425	+		GFF3293	0.77	-0.1
118,425	+		GFF3293	0.77	-0.5
118,426	-		GFF3293	0.77	-0.6
118,426	-		GFF3293	0.77	-0.2
118,426	-		GFF3293	0.77	-0.6
118,426	-		GFF3293	0.77	+0.0
118,426	-		GFF3293	0.77	-0.8
118,426	-		GFF3293	0.77	-0.7
118,426	-		GFF3293	0.77	-0.5
118,426	-		GFF3293	0.77	-1.0
118,426	-		GFF3293	0.77	-0.3
118,426	-		GFF3293	0.77	+0.1
118,426	-		GFF3293	0.77	+0.5
118,426	-		GFF3293	0.77	-0.6
118,434	+		GFF3293	0.78	-0.5
118,434	+		GFF3293	0.78	-0.3
118,434	+		GFF3293	0.78	-0.3
118,434	+		GFF3293	0.78	-0.3
118,435	-		GFF3293	0.78	+0.1
118,435	-		GFF3293	0.78	+0.4
118,435	-		GFF3293	0.78	-0.3
118,435	-		GFF3293	0.78	-2.0
118,544	+		GFF3293	0.90	+1.4
118,544	+		GFF3293	0.90	+0.1