Strain Fitness in Variovorax sp. SCN45 around GFF3156

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
591,373	+		GFF3155	0.21	-2.1
591,373	+		GFF3155	0.21	-1.7
591,373	+		GFF3155	0.21	-0.2
591,374	-		GFF3155	0.21	-0.8
591,452	-		GFF3155	0.29	-0.2
591,452	-		GFF3155	0.29	-0.2
591,508	+		GFF3155	0.35	+0.9
591,509	-		GFF3155	0.35	-0.4
591,577	+		GFF3155	0.43	-0.3
591,578	-		GFF3155	0.43	-0.6
591,634	+		GFF3155	0.49	-0.2
591,634	+		GFF3155	0.49	+0.7
591,728	-		GFF3155	0.59	-0.4
592,027	+				-0.6
592,028	-				-0.3
592,177	-				-0.3
592,467	+		GFF3156	0.30	-1.0
592,467	+		GFF3156	0.30	-1.7
592,467	+		GFF3156	0.30	-0.7
592,468	-		GFF3156	0.30	-0.6
592,468	-		GFF3156	0.30	+0.2
592,468	-		GFF3156	0.30	+0.2
592,615	-		GFF3156	0.42	+0.0
592,674	+		GFF3156	0.47	+0.2
592,674	+		GFF3156	0.47	+1.2
592,674	+		GFF3156	0.47	-0.4
592,674	+		GFF3156	0.47	-0.7
592,675	-		GFF3156	0.48	-0.9
592,675	-		GFF3156	0.48	+0.2
592,675	-		GFF3156	0.48	-1.2
592,894	-		GFF3156	0.66	-1.1
593,157	-		GFF3156	0.89	-1.0
593,345	+				-0.5
593,346	-				+0.1
593,360	+				-0.7
593,360	+				-2.0
593,360	+				+0.2
593,361	-				-1.9
593,361	-				-0.3
593,363	+				+0.5
593,363	+				-2.2
593,364	-				+0.9
593,885	+		GFF3157	0.58	+0.1
593,885	+		GFF3157	0.58	+0.6
593,903	+		GFF3157	0.60	-0.5
593,924	+		GFF3157	0.62	-0.1
593,924	+		GFF3157	0.62	-0.8
593,924	+		GFF3157	0.62	+1.6