Strain Fitness in Variovorax sp. SCN45 around GFF2985

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2984 and GFF2985 are separated by 8 nucleotidesGFF2985 and GFF2986 are separated by 4 nucleotides GFF2984 - Adenosine deaminase (EC 3.5.4.4), at 414,489 to 415,586 GFF2984 GFF2985 - BUG/TctC family periplasmic protein, at 415,595 to 416,572 GFF2985 GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674 GFF2986 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2at 414.654 kb on + strand, within GFF2984at 414.654 kb on + strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.738 kb on + strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 415.062 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.676 kb on - strandat 415.706 kb on + strand, within GFF2985at 415.707 kb on - strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.857 kb on - strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.925 kb on + strand, within GFF2986at 416.926 kb on - strand, within GFF2986at 416.926 kb on - strand, within GFF2986at 417.054 kb on + strand, within GFF2986at 417.054 kb on + strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.055 kb on - strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.243 kb on + strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.244 kb on - strand, within GFF2986at 417.417 kb on + strand, within GFF2986at 417.418 kb on - strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.456 kb on + strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.457 kb on - strand, within GFF2986at 417.477 kb on + strand, within GFF2986at 417.478 kb on - strand, within GFF2986at 417.478 kb on - strand, within GFF2986

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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414,654 + GFF2984 0.15 +1.0
414,654 + GFF2984 0.15 +0.2
414,655 - GFF2984 0.15 -0.9
414,655 - GFF2984 0.15 -0.6
414,655 - GFF2984 0.15 -1.0
414,738 + GFF2984 0.23 +0.2
414,739 - GFF2984 0.23 +2.0
414,739 - GFF2984 0.23 -1.0
414,756 + GFF2984 0.24 +0.8
414,756 + GFF2984 0.24 +0.7
414,757 - GFF2984 0.24 +0.4
414,757 - GFF2984 0.24 -0.4
414,789 + GFF2984 0.27 +0.6
414,789 + GFF2984 0.27 +1.3
415,062 + GFF2984 0.52 +0.0
415,182 + GFF2984 0.63 -0.4
415,182 + GFF2984 0.63 -0.7
415,183 - GFF2984 0.63 +1.2
415,183 - GFF2984 0.63 +0.4
415,183 - GFF2984 0.63 +0.7
415,206 + GFF2984 0.65 -0.9
415,206 + GFF2984 0.65 +0.1
415,247 - GFF2984 0.69 -0.5
415,247 - GFF2984 0.69 +0.7
415,247 - GFF2984 0.69 -1.1
415,247 - GFF2984 0.69 -0.3
415,263 + GFF2984 0.70 +0.1
415,263 + GFF2984 0.70 -0.6
415,263 + GFF2984 0.70 +1.2
415,263 + GFF2984 0.70 -0.3
415,264 - GFF2984 0.71 -0.4
415,264 - GFF2984 0.71 -0.6
415,264 - GFF2984 0.71 -0.4
415,264 - GFF2984 0.71 +0.8
415,266 + GFF2984 0.71 -0.6
415,266 + GFF2984 0.71 -0.2
415,266 + GFF2984 0.71 +0.0
415,266 + GFF2984 0.71 +0.0
415,266 + GFF2984 0.71 +1.8
415,267 - GFF2984 0.71 +0.8
415,267 - GFF2984 0.71 -0.1
415,267 - GFF2984 0.71 +0.2
415,267 - GFF2984 0.71 -0.7
415,267 - GFF2984 0.71 -0.4
415,676 - +0.6
415,706 + GFF2985 0.11 -0.5
415,707 - GFF2985 0.11 -0.2
415,856 + GFF2985 0.27 -0.4
415,856 + GFF2985 0.27 -1.6
415,856 + GFF2985 0.27 -0.8
415,857 - GFF2985 0.27 -0.5
416,057 + GFF2985 0.47 -1.1
416,057 + GFF2985 0.47 +0.0
416,057 + GFF2985 0.47 -0.7
416,057 + GFF2985 0.47 +0.4
416,057 + GFF2985 0.47 -0.5
416,058 - GFF2985 0.47 +0.2
416,058 - GFF2985 0.47 -0.9
416,058 - GFF2985 0.47 +0.2
416,058 - GFF2985 0.47 -0.7
416,058 - GFF2985 0.47 -0.2
416,063 + GFF2985 0.48 -0.1
416,063 + GFF2985 0.48 -0.1
416,063 + GFF2985 0.48 +1.2
416,063 + GFF2985 0.48 -0.3
416,063 + GFF2985 0.48 +0.6
416,063 + GFF2985 0.48 -0.2
416,064 - GFF2985 0.48 -1.5
416,064 - GFF2985 0.48 -0.8
416,064 - GFF2985 0.48 -0.6
416,925 + GFF2986 0.32 -0.4
416,926 - GFF2986 0.32 -0.5
416,926 - GFF2986 0.32 -0.2
417,054 + GFF2986 0.43 +0.7
417,054 + GFF2986 0.43 -0.4
417,055 - GFF2986 0.44 -0.7
417,055 - GFF2986 0.44 +0.1
417,055 - GFF2986 0.44 +0.3
417,055 - GFF2986 0.44 -0.4
417,055 - GFF2986 0.44 -0.6
417,055 - GFF2986 0.44 -0.2
417,243 + GFF2986 0.61 -0.4
417,243 + GFF2986 0.61 -0.9
417,243 + GFF2986 0.61 -2.1
417,243 + GFF2986 0.61 +1.3
417,243 + GFF2986 0.61 -0.5
417,243 + GFF2986 0.61 +0.4
417,244 - GFF2986 0.61 +0.6
417,244 - GFF2986 0.61 -2.0
417,244 - GFF2986 0.61 -0.6
417,244 - GFF2986 0.61 -1.2
417,244 - GFF2986 0.61 +0.0
417,417 + GFF2986 0.77 +0.0
417,418 - GFF2986 0.77 +0.1
417,456 + GFF2986 0.80 +0.1
417,456 + GFF2986 0.80 -0.3
417,456 + GFF2986 0.80 +0.3
417,457 - GFF2986 0.80 +1.2
417,457 - GFF2986 0.80 -0.4
417,457 - GFF2986 0.80 -0.4
417,457 - GFF2986 0.80 +0.1
417,457 - GFF2986 0.80 -0.2
417,477 + GFF2986 0.82 +0.0
417,478 - GFF2986 0.82 +0.8
417,478 - GFF2986 0.82 +0.2

Or see this region's nucleotide sequence