Strain Fitness in Variovorax sp. SCN45 around GFF2976

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2975 and GFF2976 are separated by 41 nucleotidesGFF2976 and GFF2977 overlap by 4 nucleotidesGFF2977 and GFF2978 are separated by 7 nucleotidesGFF2978 and GFF2979 are separated by 0 nucleotides GFF2975 - SAM-dependent methyltransferase, at 406,554 to 407,510 GFF2975 GFF2976 - hypothetical protein, at 407,552 to 408,604 GFF2976 GFF2977 - hypothetical protein, at 408,601 to 409,242 GFF2977 GFF2978 - Aromatic ring-cleaving dioxygenase, at 409,250 to 409,597 GFF2978 GFF2979 - Glutathione S-transferase (EC 2.5.1.18), at 409,598 to 410,254 GFF2979 Position (kb) 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 406.559 kb on + strandat 406.559 kb on + strandat 406.560 kb on - strandat 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.659 kb on + strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.660 kb on - strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.683 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.704 kb on + strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.705 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 406.909 kb on - strand, within GFF2975at 407.010 kb on + strand, within GFF2975at 407.011 kb on - strand, within GFF2975at 407.011 kb on - strand, within GFF2975at 407.074 kb on - strand, within GFF2975at 407.433 kb on + strandat 407.433 kb on + strandat 407.433 kb on + strandat 407.433 kb on + strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.434 kb on - strandat 407.475 kb on + strandat 407.476 kb on - strandat 407.756 kb on + strand, within GFF2976at 407.756 kb on + strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.757 kb on - strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.792 kb on + strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.793 kb on - strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.828 kb on + strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.829 kb on - strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.831 kb on + strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 407.832 kb on - strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.008 kb on + strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.009 kb on - strand, within GFF2976at 408.186 kb on - strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.395 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.419 kb on + strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.420 kb on - strand, within GFF2976at 408.497 kb on + strand, within GFF2976at 408.557 kb on + strandat 408.874 kb on + strand, within GFF2977at 408.970 kb on + strand, within GFF2977at 408.971 kb on - strand, within GFF2977at 408.971 kb on - strand, within GFF2977at 409.046 kb on - strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.108 kb on + strand, within GFF2977at 409.109 kb on - strand, within GFF2977at 409.275 kb on - strandat 409.275 kb on - strandat 409.283 kb on + strandat 409.298 kb on + strand, within GFF2978at 409.298 kb on + strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.299 kb on - strand, within GFF2978at 409.595 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.599 kb on + strandat 409.600 kb on - strandat 409.600 kb on - strandat 409.600 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
406,559 + -0.9
406,559 + -0.3
406,560 - +0.2
406,659 + GFF2975 0.11 -1.8
406,659 + GFF2975 0.11 -1.1
406,659 + GFF2975 0.11 -1.2
406,659 + GFF2975 0.11 +1.6
406,659 + GFF2975 0.11 -1.7
406,659 + GFF2975 0.11 +0.1
406,659 + GFF2975 0.11 -0.8
406,659 + GFF2975 0.11 -3.3
406,659 + GFF2975 0.11 +1.0
406,660 - GFF2975 0.11 +0.5
406,660 - GFF2975 0.11 +0.6
406,660 - GFF2975 0.11 +0.2
406,660 - GFF2975 0.11 -1.4
406,660 - GFF2975 0.11 -0.5
406,660 - GFF2975 0.11 -1.5
406,683 + GFF2975 0.13 -2.4
406,683 + GFF2975 0.13 -0.7
406,704 + GFF2975 0.16 +0.2
406,704 + GFF2975 0.16 -0.4
406,704 + GFF2975 0.16 -1.9
406,704 + GFF2975 0.16 -0.1
406,704 + GFF2975 0.16 -1.4
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 +0.3
406,705 - GFF2975 0.16 +0.4
406,705 - GFF2975 0.16 +1.0
406,705 - GFF2975 0.16 +0.8
406,705 - GFF2975 0.16 +0.2
406,705 - GFF2975 0.16 +0.2
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 -0.8
406,705 - GFF2975 0.16 -0.3
406,705 - GFF2975 0.16 +0.2
406,909 - GFF2975 0.37 -0.1
406,909 - GFF2975 0.37 +0.4
406,909 - GFF2975 0.37 -0.4
407,010 + GFF2975 0.48 -0.6
407,011 - GFF2975 0.48 -1.4
407,011 - GFF2975 0.48 -0.2
407,074 - GFF2975 0.54 -0.5
407,433 + -0.6
407,433 + -1.4
407,433 + +0.0
407,433 + +0.1
407,434 - +0.5
407,434 - +0.0
407,434 - +0.0
407,434 - -0.9
407,434 - -1.1
407,434 - -0.5
407,434 - +0.0
407,475 + -1.1
407,476 - -0.7
407,756 + GFF2976 0.19 -0.3
407,756 + GFF2976 0.19 +0.5
407,757 - GFF2976 0.19 +1.9
407,757 - GFF2976 0.19 +0.9
407,757 - GFF2976 0.19 -0.2
407,792 + GFF2976 0.23 +1.0
407,792 + GFF2976 0.23 -0.3
407,792 + GFF2976 0.23 +0.3
407,792 + GFF2976 0.23 +0.4
407,792 + GFF2976 0.23 +0.4
407,792 + GFF2976 0.23 -0.6
407,792 + GFF2976 0.23 -0.5
407,792 + GFF2976 0.23 -0.0
407,792 + GFF2976 0.23 +0.3
407,793 - GFF2976 0.23 +0.2
407,793 - GFF2976 0.23 +1.3
407,793 - GFF2976 0.23 -1.1
407,793 - GFF2976 0.23 -0.5
407,793 - GFF2976 0.23 -0.2
407,793 - GFF2976 0.23 +0.2
407,793 - GFF2976 0.23 -2.0
407,793 - GFF2976 0.23 -0.3
407,828 + GFF2976 0.26 -0.7
407,828 + GFF2976 0.26 -0.9
407,828 + GFF2976 0.26 -0.4
407,829 - GFF2976 0.26 -0.6
407,829 - GFF2976 0.26 -0.1
407,831 + GFF2976 0.26 -0.2
407,831 + GFF2976 0.26 -1.2
407,831 + GFF2976 0.26 -0.2
407,831 + GFF2976 0.26 -0.7
407,831 + GFF2976 0.26 +0.2
407,831 + GFF2976 0.26 -1.1
407,831 + GFF2976 0.26 -1.0
407,831 + GFF2976 0.26 -0.5
407,831 + GFF2976 0.26 -0.1
407,831 + GFF2976 0.26 +0.9
407,832 - GFF2976 0.27 -0.1
407,832 - GFF2976 0.27 -0.3
407,832 - GFF2976 0.27 +0.5
407,832 - GFF2976 0.27 +0.0
407,832 - GFF2976 0.27 -0.1
407,832 - GFF2976 0.27 +0.2
407,832 - GFF2976 0.27 -0.7
408,008 + GFF2976 0.43 -0.0
408,008 + GFF2976 0.43 +1.4
408,009 - GFF2976 0.43 +0.1
408,009 - GFF2976 0.43 +0.9
408,009 - GFF2976 0.43 -0.6
408,186 - GFF2976 0.60 -0.2
408,395 + GFF2976 0.80 +0.7
408,395 + GFF2976 0.80 -0.6
408,395 + GFF2976 0.80 +0.9
408,419 + GFF2976 0.82 -0.1
408,419 + GFF2976 0.82 -0.6
408,419 + GFF2976 0.82 -0.2
408,419 + GFF2976 0.82 -1.2
408,419 + GFF2976 0.82 +0.6
408,419 + GFF2976 0.82 +0.3
408,420 - GFF2976 0.82 -0.2
408,420 - GFF2976 0.82 +0.0
408,420 - GFF2976 0.82 +0.3
408,497 + GFF2976 0.90 +0.1
408,557 + -0.3
408,874 + GFF2977 0.43 -0.4
408,970 + GFF2977 0.57 -0.8
408,971 - GFF2977 0.58 +0.1
408,971 - GFF2977 0.58 -0.2
409,046 - GFF2977 0.69 +0.6
409,108 + GFF2977 0.79 -0.5
409,108 + GFF2977 0.79 +0.3
409,108 + GFF2977 0.79 +0.1
409,109 - GFF2977 0.79 +0.1
409,275 - -0.4
409,275 - +0.8
409,283 + -0.2
409,298 + GFF2978 0.14 -0.6
409,298 + GFF2978 0.14 -0.9
409,299 - GFF2978 0.14 -0.4
409,299 - GFF2978 0.14 -1.7
409,299 - GFF2978 0.14 +0.4
409,595 + -0.9
409,599 + -1.0
409,599 + +1.0
409,599 + -0.3
409,599 + -1.5
409,600 - -0.2
409,600 - -1.7
409,600 - -0.5

Or see this region's nucleotide sequence