Strain Fitness in Variovorax sp. SCN45 around GFF297

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF295 and GFF296 are separated by 10 nucleotidesGFF296 and GFF297 are separated by 3 nucleotidesGFF297 and GFF298 overlap by 4 nucleotidesGFF298 and GFF299 overlap by 4 nucleotides GFF295 - Ribonuclease G, at 329,644 to 331,170 GFF295 GFF296 - Septum formation protein Maf, at 331,181 to 331,783 GFF296 GFF297 - FIG00978250: hypothetical protein, at 331,787 to 332,500 GFF297 GFF298 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177), at 332,497 to 332,964 GFF298 GFF299 - Ribosomal silencing factor RsfA, at 332,961 to 333,647 GFF299 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.049 kb on + strandat 331.050 kb on - strandat 331.050 kb on - strandat 331.186 kb on + strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.238 kb on + strandat 331.251 kb on + strand, within GFF296at 331.252 kb on - strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.342 kb on - strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.767 kb on + strandat 331.767 kb on + strandat 331.767 kb on + strandat 331.768 kb on - strandat 331.768 kb on - strandat 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.105 kb on + strand, within GFF297at 332.106 kb on - strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.454 kb on + strandat 332.454 kb on + strandat 332.454 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.510 kb on + strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.511 kb on - strandat 332.543 kb on + strandat 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.810 kb on + strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.811 kb on - strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.897 kb on + strand, within GFF298at 332.898 kb on - strand, within GFF298at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.331 kb on + strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.332 kb on - strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.334 kb on + strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299at 333.335 kb on - strand, within GFF299

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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331,049 + -1.0
331,050 - -1.0
331,050 - -1.9
331,186 + -0.5
331,187 - -0.7
331,187 - -0.2
331,187 - +0.2
331,187 - +0.3
331,238 + +0.1
331,251 + GFF296 0.12 +0.9
331,252 - GFF296 0.12 -0.6
331,302 + GFF296 0.20 +1.0
331,302 + GFF296 0.20 +0.3
331,302 + GFF296 0.20 -0.0
331,302 + GFF296 0.20 +0.1
331,302 + GFF296 0.20 -1.3
331,303 - GFF296 0.20 -0.5
331,303 - GFF296 0.20 -0.7
331,303 - GFF296 0.20 -0.5
331,303 - GFF296 0.20 -0.2
331,303 - GFF296 0.20 -0.8
331,303 - GFF296 0.20 +0.0
331,303 - GFF296 0.20 -0.4
331,303 - GFF296 0.20 -1.9
331,342 - GFF296 0.27 -1.0
331,632 + GFF296 0.75 +0.9
331,632 + GFF296 0.75 +0.1
331,632 + GFF296 0.75 -0.8
331,632 + GFF296 0.75 +1.3
331,632 + GFF296 0.75 -0.2
331,632 + GFF296 0.75 -0.0
331,633 - GFF296 0.75 -0.5
331,633 - GFF296 0.75 -0.6
331,633 - GFF296 0.75 -1.0
331,633 - GFF296 0.75 -0.4
331,633 - GFF296 0.75 +0.4
331,633 - GFF296 0.75 -0.3
331,633 - GFF296 0.75 -0.9
331,633 - GFF296 0.75 -1.6
331,703 + GFF296 0.87 +0.2
331,703 + GFF296 0.87 -0.6
331,703 + GFF296 0.87 -0.6
331,704 - GFF296 0.87 -2.8
331,704 - GFF296 0.87 -0.3
331,704 - GFF296 0.87 +0.5
331,704 - GFF296 0.87 +0.3
331,767 + +1.0
331,767 + +0.1
331,767 + -0.8
331,768 - +0.0
331,768 - -1.2
332,095 + GFF297 0.43 -0.1
332,095 + GFF297 0.43 +1.3
332,095 + GFF297 0.43 -0.3
332,095 + GFF297 0.43 -0.3
332,095 + GFF297 0.43 +0.2
332,096 - GFF297 0.43 +0.5
332,096 - GFF297 0.43 +2.3
332,096 - GFF297 0.43 -1.0
332,105 + GFF297 0.45 -0.0
332,106 - GFF297 0.45 +0.5
332,148 + GFF297 0.51 -0.2
332,148 + GFF297 0.51 -0.7
332,148 + GFF297 0.51 -0.5
332,148 + GFF297 0.51 -0.4
332,148 + GFF297 0.51 +0.5
332,148 + GFF297 0.51 -0.8
332,148 + GFF297 0.51 -0.0
332,148 + GFF297 0.51 +0.9
332,148 + GFF297 0.51 -0.1
332,148 + GFF297 0.51 -0.7
332,148 + GFF297 0.51 -0.0
332,149 - GFF297 0.51 +0.3
332,149 - GFF297 0.51 +0.0
332,149 - GFF297 0.51 -0.7
332,149 - GFF297 0.51 +0.4
332,150 - GFF297 0.51 +0.3
332,150 - GFF297 0.51 -0.3
332,454 + -0.0
332,454 + -0.6
332,454 + +0.5
332,510 + -0.3
332,510 + -1.0
332,510 + -0.2
332,510 + -1.1
332,510 + +0.8
332,511 - -0.1
332,511 - -1.1
332,511 - +0.2
332,511 - +0.1
332,543 + +0.1
332,810 + GFF298 0.67 +0.2
332,810 + GFF298 0.67 -0.4
332,810 + GFF298 0.67 -0.2
332,810 + GFF298 0.67 -0.1
332,810 + GFF298 0.67 +0.2
332,810 + GFF298 0.67 -0.6
332,810 + GFF298 0.67 -0.1
332,811 - GFF298 0.67 -0.5
332,811 - GFF298 0.67 -1.0
332,811 - GFF298 0.67 +0.1
332,811 - GFF298 0.67 +0.4
332,897 + GFF298 0.85 -0.7
332,897 + GFF298 0.85 +1.3
332,898 - GFF298 0.86 +0.1
333,331 + GFF299 0.54 +0.4
333,331 + GFF299 0.54 -0.5
333,331 + GFF299 0.54 -1.0
333,331 + GFF299 0.54 -2.2
333,331 + GFF299 0.54 +0.3
333,331 + GFF299 0.54 -1.0
333,331 + GFF299 0.54 -1.0
333,331 + GFF299 0.54 -0.0
333,331 + GFF299 0.54 -0.9
333,331 + GFF299 0.54 -2.0
333,331 + GFF299 0.54 -0.7
333,331 + GFF299 0.54 -0.3
333,331 + GFF299 0.54 -0.5
333,331 + GFF299 0.54 +0.0
333,332 - GFF299 0.54 -1.0
333,332 - GFF299 0.54 -0.5
333,332 - GFF299 0.54 +0.5
333,332 - GFF299 0.54 -0.5
333,332 - GFF299 0.54 -0.3
333,332 - GFF299 0.54 -1.2
333,332 - GFF299 0.54 -1.6
333,332 - GFF299 0.54 -1.0
333,332 - GFF299 0.54 -1.0
333,332 - GFF299 0.54 +0.5
333,332 - GFF299 0.54 +0.2
333,332 - GFF299 0.54 -1.0
333,334 + GFF299 0.54 +0.3
333,334 + GFF299 0.54 -0.1
333,334 + GFF299 0.54 -0.3
333,334 + GFF299 0.54 +0.1
333,334 + GFF299 0.54 +0.7
333,334 + GFF299 0.54 -0.0
333,334 + GFF299 0.54 -2.7
333,334 + GFF299 0.54 -0.8
333,335 - GFF299 0.54 +0.9
333,335 - GFF299 0.54 +2.3
333,335 - GFF299 0.54 -0.6
333,335 - GFF299 0.54 +0.4
333,335 - GFF299 0.54 +0.2

Or see this region's nucleotide sequence