Strain Fitness in Variovorax sp. SCN45 around GFF2757

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2755 and GFF2756 overlap by 4 nucleotidesGFF2756 and GFF2757 are separated by 36 nucleotidesGFF2757 and GFF2758 are separated by 15 nucleotidesGFF2758 and GFF2759 overlap by 17 nucleotides GFF2755 - Ribosyl nicotinamide transporter, PnuC-like, at 187,850 to 188,395 GFF2755 GFF2756 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 188,392 to 189,063 GFF2756 GFF2757 - hypothetical protein, at 189,100 to 190,071 GFF2757 GFF2758 - Transcriptional regulator, RpiR family, at 190,087 to 191,040 GFF2758 GFF2759 - hypothetical protein, at 191,024 to 192,070 GFF2759 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1at 188.318 kb on + strand, within GFF2755at 188.318 kb on + strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.351 kb on + strandat 188.351 kb on + strandat 188.352 kb on - strandat 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.525 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.705 kb on - strand, within GFF2756at 188.735 kb on - strand, within GFF2756at 188.735 kb on - strand, within GFF2756at 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.061 kb on + strandat 189.061 kb on + strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.316 kb on + strand, within GFF2757at 189.316 kb on + strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.607 kb on + strand, within GFF2757at 189.655 kb on + strand, within GFF2757at 189.655 kb on + strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 190.199 kb on + strand, within GFF2758at 190.199 kb on + strand, within GFF2758at 190.200 kb on - strand, within GFF2758at 190.200 kb on - strand, within GFF2758at 190.358 kb on + strand, within GFF2758at 190.358 kb on + strand, within GFF2758at 190.359 kb on - strand, within GFF2758at 190.478 kb on + strand, within GFF2758at 190.479 kb on - strand, within GFF2758at 190.479 kb on - strand, within GFF2758at 190.727 kb on + strand, within GFF2758at 190.728 kb on - strand, within GFF2758at 190.728 kb on - strand, within GFF2758at 190.794 kb on - strand, within GFF2758

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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188,318 + GFF2755 0.86 -0.1
188,318 + GFF2755 0.86 +1.5
188,319 - GFF2755 0.86 +0.0
188,319 - GFF2755 0.86 +0.4
188,319 - GFF2755 0.86 +0.2
188,319 - GFF2755 0.86 -0.6
188,351 + -0.2
188,351 + -0.7
188,352 - -0.2
188,524 + GFF2756 0.20 +0.8
188,524 + GFF2756 0.20 -0.3
188,524 + GFF2756 0.20 +0.9
188,524 + GFF2756 0.20 +0.7
188,525 - GFF2756 0.20 +1.3
188,672 - GFF2756 0.42 -0.0
188,672 - GFF2756 0.42 -1.0
188,672 - GFF2756 0.42 -0.0
188,704 + GFF2756 0.46 -0.7
188,704 + GFF2756 0.46 +0.0
188,704 + GFF2756 0.46 -0.4
188,705 - GFF2756 0.47 +0.0
188,735 - GFF2756 0.51 +0.8
188,735 - GFF2756 0.51 -0.2
189,027 + -0.2
189,027 + -0.1
189,027 + -0.7
189,027 + -1.5
189,027 + +1.0
189,027 + -0.4
189,027 + -0.4
189,027 + -0.0
189,027 + -0.7
189,027 + -0.3
189,027 + -0.3
189,027 + +0.5
189,027 + -0.2
189,027 + +0.2
189,028 - -0.8
189,028 - +1.5
189,028 - -0.0
189,028 - -0.3
189,028 - -0.5
189,028 - +0.0
189,028 - -0.5
189,028 - +0.4
189,028 - +0.9
189,028 - +0.6
189,028 - +0.2
189,028 - -1.0
189,028 - +0.0
189,028 - -0.2
189,028 - -0.1
189,028 - +0.0
189,028 - +0.2
189,028 - +0.3
189,028 - -1.4
189,061 + -0.1
189,061 + +0.2
189,148 - +0.4
189,148 - +0.1
189,316 + GFF2757 0.22 +0.4
189,316 + GFF2757 0.22 -0.5
189,317 - GFF2757 0.22 +0.1
189,317 - GFF2757 0.22 -0.0
189,317 - GFF2757 0.22 +1.5
189,317 - GFF2757 0.22 +0.9
189,317 - GFF2757 0.22 -0.3
189,607 + GFF2757 0.52 -3.0
189,655 + GFF2757 0.57 -0.7
189,655 + GFF2757 0.57 +0.4
189,656 - GFF2757 0.57 -1.5
189,656 - GFF2757 0.57 +0.8
189,656 - GFF2757 0.57 -0.6
189,656 - GFF2757 0.57 +1.5
189,656 - GFF2757 0.57 +0.7
189,883 + GFF2757 0.81 +0.5
189,883 + GFF2757 0.81 +0.1
189,883 + GFF2757 0.81 -0.4
189,883 + GFF2757 0.81 +0.5
189,884 - GFF2757 0.81 -1.0
189,884 - GFF2757 0.81 -1.0
189,884 - GFF2757 0.81 +0.2
189,884 - GFF2757 0.81 -0.3
189,884 - GFF2757 0.81 -0.1
189,884 - GFF2757 0.81 +0.2
189,884 - GFF2757 0.81 -1.8
189,884 - GFF2757 0.81 +0.7
190,199 + GFF2758 0.12 -1.0
190,199 + GFF2758 0.12 -0.6
190,200 - GFF2758 0.12 -0.0
190,200 - GFF2758 0.12 -1.0
190,358 + GFF2758 0.28 -0.7
190,358 + GFF2758 0.28 +0.3
190,359 - GFF2758 0.29 +0.0
190,478 + GFF2758 0.41 -1.4
190,479 - GFF2758 0.41 +1.5
190,479 - GFF2758 0.41 +0.1
190,727 + GFF2758 0.67 +0.7
190,728 - GFF2758 0.67 -1.2
190,728 - GFF2758 0.67 -1.5
190,794 - GFF2758 0.74 -0.1

Or see this region's nucleotide sequence