Strain Fitness in Variovorax sp. SCN45 around GFF2735

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2734 and GFF2735 are separated by 60 nucleotidesGFF2735 and GFF2736 are separated by 100 nucleotides GFF2734 - DNA topoisomerase IV subunit B (EC 5.99.1.3), at 168,990 to 170,987 GFF2734 GFF2735 - Transcriptional regulator, LysR family, at 171,048 to 171,935 GFF2735 GFF2736 - Uncharacterized MFS-type transporter, at 172,036 to 173,247 GFF2736 Position (kb) 171 172Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.122 kb on + strand, within GFF2734at 170.123 kb on - strand, within GFF2734at 170.272 kb on + strand, within GFF2734at 170.272 kb on + strand, within GFF2734at 170.273 kb on - strand, within GFF2734at 170.273 kb on - strand, within GFF2734at 170.293 kb on + strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.294 kb on - strand, within GFF2734at 170.419 kb on + strand, within GFF2734at 170.419 kb on + strand, within GFF2734at 170.626 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.677 kb on + strand, within GFF2734at 170.678 kb on - strand, within GFF2734at 170.678 kb on - strand, within GFF2734at 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.872 kb on + strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 170.873 kb on - strandat 171.000 kb on + strandat 171.000 kb on + strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.001 kb on - strandat 171.018 kb on + strandat 171.019 kb on - strandat 171.019 kb on - strandat 171.019 kb on - strandat 171.033 kb on - strandat 171.033 kb on - strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.049 kb on + strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.050 kb on - strandat 171.361 kb on + strand, within GFF2735at 171.367 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.430 kb on + strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.431 kb on - strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.589 kb on + strand, within GFF2735at 171.590 kb on - strand, within GFF2735at 171.590 kb on - strand, within GFF2735at 171.993 kb on - strandat 172.023 kb on + strandat 172.024 kb on - strandat 172.219 kb on + strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.220 kb on - strand, within GFF2736at 172.351 kb on + strand, within GFF2736at 172.352 kb on - strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.735 kb on + strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.736 kb on - strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.741 kb on + strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736at 172.742 kb on - strand, within GFF2736

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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170,122 + GFF2734 0.57 -2.2
170,122 + GFF2734 0.57 -0.2
170,122 + GFF2734 0.57 -0.8
170,122 + GFF2734 0.57 -1.6
170,122 + GFF2734 0.57 -0.3
170,122 + GFF2734 0.57 -0.0
170,122 + GFF2734 0.57 -0.5
170,122 + GFF2734 0.57 +0.2
170,122 + GFF2734 0.57 -2.2
170,123 - GFF2734 0.57 -0.5
170,272 + GFF2734 0.64 -0.5
170,272 + GFF2734 0.64 -0.5
170,273 - GFF2734 0.64 -0.8
170,273 - GFF2734 0.64 -0.5
170,293 + GFF2734 0.65 -1.3
170,294 - GFF2734 0.65 +0.7
170,294 - GFF2734 0.65 -0.5
170,294 - GFF2734 0.65 -0.7
170,419 + GFF2734 0.72 -0.8
170,419 + GFF2734 0.72 -1.6
170,626 + GFF2734 0.82 +0.1
170,677 + GFF2734 0.84 -3.5
170,677 + GFF2734 0.84 +0.7
170,677 + GFF2734 0.84 +0.3
170,678 - GFF2734 0.84 -0.3
170,678 - GFF2734 0.84 -1.3
170,872 + -1.3
170,872 + -0.0
170,872 + -1.3
170,872 + -2.2
170,872 + -0.5
170,873 - -1.5
170,873 - -1.4
170,873 - +0.2
170,873 - -0.5
170,873 - +0.4
170,873 - -0.8
170,873 - -0.9
170,873 - -1.3
170,873 - -1.7
171,000 + -1.0
171,000 + +2.0
171,001 - -0.8
171,001 - +2.5
171,001 - +0.8
171,001 - -0.1
171,001 - -0.8
171,001 - -1.8
171,018 + +0.5
171,019 - +3.1
171,019 - +0.5
171,019 - -0.5
171,033 - +1.9
171,033 - -0.1
171,049 + +2.9
171,049 + -0.0
171,049 + -1.2
171,049 + +0.1
171,049 + -0.3
171,050 - -1.5
171,050 - -1.4
171,050 - +0.3
171,361 + GFF2735 0.35 +0.1
171,367 + GFF2735 0.36 +0.8
171,430 + GFF2735 0.43 +1.4
171,430 + GFF2735 0.43 +0.3
171,430 + GFF2735 0.43 +0.4
171,431 - GFF2735 0.43 -0.6
171,431 - GFF2735 0.43 +1.1
171,431 - GFF2735 0.43 -0.6
171,589 + GFF2735 0.61 +0.2
171,589 + GFF2735 0.61 +0.5
171,590 - GFF2735 0.61 +0.2
171,590 - GFF2735 0.61 -0.4
171,993 - +1.2
172,023 + -1.0
172,024 - +0.5
172,219 + GFF2736 0.15 -0.5
172,220 - GFF2736 0.15 +0.5
172,220 - GFF2736 0.15 -2.0
172,220 - GFF2736 0.15 -0.3
172,351 + GFF2736 0.26 -1.0
172,352 - GFF2736 0.26 -1.7
172,735 + GFF2736 0.58 +0.7
172,735 + GFF2736 0.58 -0.0
172,735 + GFF2736 0.58 -0.5
172,735 + GFF2736 0.58 +0.3
172,735 + GFF2736 0.58 +0.2
172,735 + GFF2736 0.58 +0.0
172,735 + GFF2736 0.58 +0.8
172,736 - GFF2736 0.58 -0.1
172,736 - GFF2736 0.58 -1.2
172,736 - GFF2736 0.58 +0.3
172,736 - GFF2736 0.58 -0.2
172,736 - GFF2736 0.58 +0.0
172,741 + GFF2736 0.58 -2.2
172,741 + GFF2736 0.58 +0.2
172,741 + GFF2736 0.58 +2.0
172,741 + GFF2736 0.58 +0.8
172,741 + GFF2736 0.58 +0.2
172,741 + GFF2736 0.58 -0.6
172,741 + GFF2736 0.58 +0.5
172,741 + GFF2736 0.58 +1.3
172,741 + GFF2736 0.58 -0.1
172,741 + GFF2736 0.58 +0.5
172,741 + GFF2736 0.58 +0.6
172,742 - GFF2736 0.58 -0.8
172,742 - GFF2736 0.58 -1.6
172,742 - GFF2736 0.58 +1.0
172,742 - GFF2736 0.58 -0.8
172,742 - GFF2736 0.58 -0.0
172,742 - GFF2736 0.58 +0.1
172,742 - GFF2736 0.58 -0.1
172,742 - GFF2736 0.58 -0.7
172,742 - GFF2736 0.58 -1.5
172,742 - GFF2736 0.58 +1.5
172,742 - GFF2736 0.58 -0.7
172,742 - GFF2736 0.58 -1.0
172,742 - GFF2736 0.58 -0.5
172,742 - GFF2736 0.58 +0.8
172,742 - GFF2736 0.58 +0.5
172,742 - GFF2736 0.58 -0.3
172,742 - GFF2736 0.58 -0.9
172,742 - GFF2736 0.58 +1.3
172,742 - GFF2736 0.58 +0.4
172,742 - GFF2736 0.58 +0.8

Or see this region's nucleotide sequence