Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2625 and GFF2626 are separated by 91 nucleotides GFF2626 and GFF2627 overlap by 1 nucleotides
GFF2625 - hypothetical protein, at 36,952 to 39,132
GFF2625
GFF2626 - major facilitator superfamily MFS_1, at 39,224 to 40,417
GFF2626
GFF2627 - Chorismate synthase (EC 4.2.3.5), at 40,417 to 41,526
GFF2627
Position (kb) 39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 38.409 kb on - strand, within GFF2625 at 38.409 kb on - strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.543 kb on + strand, within GFF2625 at 38.543 kb on + strand, within GFF2625 at 38.544 kb on - strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 39.194 kb on + strand at 39.194 kb on + strand at 39.194 kb on + strand at 39.195 kb on - strand at 39.195 kb on - strand at 39.195 kb on - strand at 39.387 kb on + strand, within GFF2626 at 39.697 kb on - strand, within GFF2626 at 39.714 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 40.144 kb on - strand, within GFF2626 at 40.225 kb on - strand, within GFF2626 at 40.317 kb on + strand at 40.318 kb on - strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.445 kb on - strand at 40.836 kb on - strand, within GFF2627 at 40.862 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.196 kb on - strand, within GFF2627 at 41.243 kb on + strand, within GFF2627 at 41.244 kb on - strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.313 kb on - strand, within GFF2627
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 38,409 - GFF2625 0.67 -0.5 38,409 - GFF2625 0.67 -0.4 38,486 + GFF2625 0.70 -1.0 38,486 + GFF2625 0.70 +0.1 38,486 + GFF2625 0.70 -1.5 38,486 + GFF2625 0.70 -0.4 38,487 - GFF2625 0.70 -1.6 38,487 - GFF2625 0.70 +1.5 38,487 - GFF2625 0.70 -1.8 38,487 - GFF2625 0.70 +0.3 38,487 - GFF2625 0.70 -0.1 38,487 - GFF2625 0.70 -0.9 38,487 - GFF2625 0.70 +0.1 38,543 + GFF2625 0.73 -1.5 38,543 + GFF2625 0.73 -0.1 38,544 - GFF2625 0.73 -0.3 38,588 + GFF2625 0.75 +0.7 38,588 + GFF2625 0.75 +0.2 38,588 + GFF2625 0.75 -0.7 38,588 + GFF2625 0.75 -0.7 38,588 + GFF2625 0.75 -0.5 38,589 - GFF2625 0.75 +0.5 38,589 - GFF2625 0.75 -0.9 38,589 - GFF2625 0.75 +0.8 38,589 - GFF2625 0.75 +0.5 38,805 - GFF2625 0.85 +0.5 38,805 - GFF2625 0.85 -1.9 38,805 - GFF2625 0.85 -0.1 39,194 + +0.3 39,194 + +0.1 39,194 + +0.2 39,195 - -0.2 39,195 - -0.5 39,195 - +0.2 39,387 + GFF2626 0.14 +0.2 39,697 - GFF2626 0.40 +0.1 39,714 + GFF2626 0.41 +0.6 39,732 + GFF2626 0.43 +0.5 39,732 + GFF2626 0.43 +0.8 39,732 + GFF2626 0.43 +1.1 39,733 - GFF2626 0.43 +0.4 39,733 - GFF2626 0.43 -0.3 39,733 - GFF2626 0.43 -0.3 40,144 - GFF2626 0.77 +0.5 40,225 - GFF2626 0.84 -0.4 40,317 + -0.7 40,318 - +1.0 40,347 + +1.3 40,347 + +0.1 40,347 + +1.1 40,348 - +0.4 40,348 - -0.2 40,348 - -0.8 40,418 + -2.5 40,418 + -1.3 40,418 + +1.0 40,419 - -0.6 40,419 - +0.1 40,445 - +0.5 40,836 - GFF2627 0.38 -2.2 40,862 + GFF2627 0.40 -3.3 40,955 + GFF2627 0.48 -1.8 40,955 + GFF2627 0.48 -2.4 40,956 - GFF2627 0.49 -0.5 40,956 - GFF2627 0.49 -2.5 41,081 + GFF2627 0.60 -0.8 41,081 + GFF2627 0.60 -3.2 41,196 - GFF2627 0.70 -2.2 41,243 + GFF2627 0.74 -1.9 41,244 - GFF2627 0.75 -1.3 41,312 + GFF2627 0.81 -1.0 41,312 + GFF2627 0.81 -1.0 41,313 - GFF2627 0.81 -2.6 41,313 - GFF2627 0.81 -2.5
Or see this region's nucleotide sequence