Strain Fitness in Variovorax sp. SCN45 around GFF2611

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
14,991	-				-2.5
14,991	-				-1.2
14,991	-				-0.1
15,200	+		GFF2610	0.30	-2.2
15,200	+		GFF2610	0.30	-1.2
15,200	+		GFF2610	0.30	-0.7
15,221	+		GFF2610	0.32	+0.5
15,221	+		GFF2610	0.32	-0.9
15,221	+		GFF2610	0.32	-0.7
15,221	+		GFF2610	0.32	-0.5
15,221	+		GFF2610	0.32	-0.0
15,221	+		GFF2610	0.32	-0.2
15,221	+		GFF2610	0.32	+0.5
15,221	+		GFF2610	0.32	-0.1
15,221	+		GFF2610	0.32	-0.2
15,222	-		GFF2610	0.32	+2.0
15,222	-		GFF2610	0.32	+0.5
15,222	-		GFF2610	0.32	-0.5
15,293	+		GFF2610	0.39	-0.2
15,293	+		GFF2610	0.39	+0.1
15,293	+		GFF2610	0.39	-0.3
15,293	+		GFF2610	0.39	-0.2
15,293	+		GFF2610	0.39	+1.0
15,293	+		GFF2610	0.39	-1.2
15,293	+		GFF2610	0.39	-1.5
15,294	-		GFF2610	0.40	-2.9
15,344	+		GFF2610	0.45	+0.1
15,344	+		GFF2610	0.45	-0.9
15,344	+		GFF2610	0.45	-0.3
15,345	-		GFF2610	0.45	-1.0
15,345	-		GFF2610	0.45	-0.5
15,458	+		GFF2610	0.57	-0.5
15,458	+		GFF2610	0.57	-0.9
15,458	+		GFF2610	0.57	+0.8
15,459	-		GFF2610	0.57	-0.4
15,459	-		GFF2610	0.57	-0.7
15,797	-				-0.6
15,908	+				-1.3
15,908	+				-0.3
15,908	+				-0.6
15,908	+				-0.3
15,908	+				-1.6
15,909	-				+0.8
15,909	-				+1.2
15,909	-				-1.0
15,909	-				-1.5
15,909	-				+0.2
16,007	+				-0.8
16,007	+				+0.3
16,007	+				-0.5
16,083	-		GFF2611	0.17	-0.5
16,199	+		GFF2611	0.29	-0.1
16,199	+		GFF2611	0.29	-0.7
16,199	+		GFF2611	0.29	-0.2
16,199	+		GFF2611	0.29	-0.8
16,199	+		GFF2611	0.29	+1.9
16,200	-		GFF2611	0.29	-1.3
16,200	-		GFF2611	0.29	+0.4
16,200	-		GFF2611	0.29	-2.0
16,200	-		GFF2611	0.29	-0.2
16,200	-		GFF2611	0.29	-2.2
16,200	-		GFF2611	0.29	-1.4
16,232	+		GFF2611	0.32	+0.1
16,232	+		GFF2611	0.32	-1.0
16,232	+		GFF2611	0.32	-0.8
16,232	+		GFF2611	0.32	-0.5
16,233	-		GFF2611	0.32	-0.4
16,233	-		GFF2611	0.32	-0.4
16,233	-		GFF2611	0.32	-0.6
16,233	-		GFF2611	0.32	+1.0
16,304	+		GFF2611	0.39	+0.1
16,304	+		GFF2611	0.39	+0.3
16,304	+		GFF2611	0.39	-0.7
16,304	+		GFF2611	0.39	+0.5
16,304	+		GFF2611	0.39	-1.0
16,304	+		GFF2611	0.39	+0.6
16,305	-		GFF2611	0.39	-0.4
16,305	-		GFF2611	0.39	-0.0
16,305	-		GFF2611	0.39	+0.6
16,305	-		GFF2611	0.39	-0.0
16,305	-		GFF2611	0.39	+0.6
16,305	-		GFF2611	0.39	-0.2
16,485	-		GFF2611	0.57	-1.0
16,511	+		GFF2611	0.60	-1.8
16,511	+		GFF2611	0.60	-0.1
16,511	+		GFF2611	0.60	-0.8
16,511	+		GFF2611	0.60	-1.2
16,511	+		GFF2611	0.60	-0.9
16,512	-		GFF2611	0.60	+2.1
16,512	-		GFF2611	0.60	-0.0
16,512	-		GFF2611	0.60	+0.1
16,512	-		GFF2611	0.60	+1.1
16,512	-		GFF2611	0.60	-0.8
16,512	-		GFF2611	0.60	-1.4
16,512	-		GFF2611	0.60	-0.5
16,512	-		GFF2611	0.60	-1.0
16,512	-		GFF2611	0.60	-0.0
16,512	-		GFF2611	0.60	+0.2
16,512	-		GFF2611	0.60	-0.0
16,940	+				+0.5
17,018	+				-1.9
17,037	+				-0.6
17,037	+				-1.1
17,052	+				-0.2
17,052	+				-1.5
17,053	-				+1.2
17,053	-				+0.3
17,087	+				+0.1
17,087	+				+0.2
17,087	+				-0.3
17,154	+				-0.2
17,485	+		GFF2612	0.72	-0.2
17,485	+		GFF2612	0.72	+1.5
17,485	+		GFF2612	0.72	+0.0
17,486	-		GFF2612	0.72	-0.2
17,486	-		GFF2612	0.72	-0.5
17,486	-		GFF2612	0.72	+0.1
17,486	-		GFF2612	0.72	+0.3
17,486	-		GFF2612	0.72	-0.2
17,486	-		GFF2612	0.72	+0.1
17,486	-		GFF2612	0.72	+1.0
17,527	-		GFF2612	0.81	-0.4
17,609	+				-0.2
17,609	+				-0.3
17,610	-				-2.2
17,610	-				+0.2
17,610	-				-0.7
17,610	-				+1.5
17,637	+				+1.8
17,725	-				-1.0
17,725	-				-0.4
17,725	-				-0.4
17,800	-				-1.6
17,853	+				+1.2