Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2586 and GFF2587 are separated by 7 nucleotides GFF2587 and GFF2588 overlap by 37 nucleotides
GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354
GFF2586
GFF2587 - hypothetical protein, at 643,362 to 643,628
GFF2587
GFF2588 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 643,592 to 645,688
GFF2588
Position (kb) 643
644 Strain fitness (log2 ratio) -2
-1
0
1 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.428 kb on + strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.429 kb on - strand, within GFF2586 at 642.638 kb on + strand, within GFF2586 at 642.638 kb on + strand, within GFF2586 at 642.639 kb on - strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.923 kb on + strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.924 kb on - strand, within GFF2586 at 642.953 kb on + strand, within GFF2586 at 642.954 kb on - strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.962 kb on + strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 642.963 kb on - strand, within GFF2586 at 643.363 kb on + strand at 643.363 kb on + strand at 643.363 kb on + strand at 643.363 kb on + strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.364 kb on - strand at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.497 kb on + strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.498 kb on - strand, within GFF2587 at 643.776 kb on + strand at 643.776 kb on + strand at 643.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 642,428 + GFF2586 0.46 -0.5 642,428 + GFF2586 0.46 -0.0 642,428 + GFF2586 0.46 -1.6 642,428 + GFF2586 0.46 -0.3 642,428 + GFF2586 0.46 +1.1 642,428 + GFF2586 0.46 +0.4 642,429 - GFF2586 0.46 -0.4 642,429 - GFF2586 0.46 -0.0 642,429 - GFF2586 0.46 -0.9 642,429 - GFF2586 0.46 -0.1 642,638 + GFF2586 0.58 +0.1 642,638 + GFF2586 0.58 -0.9 642,639 - GFF2586 0.58 +0.2 642,923 + GFF2586 0.75 +0.5 642,923 + GFF2586 0.75 -1.2 642,923 + GFF2586 0.75 -0.9 642,923 + GFF2586 0.75 +0.2 642,923 + GFF2586 0.75 +0.1 642,924 - GFF2586 0.75 +1.5 642,924 - GFF2586 0.75 +1.3 642,924 - GFF2586 0.75 +0.5 642,924 - GFF2586 0.75 -1.8 642,953 + GFF2586 0.77 -0.5 642,954 - GFF2586 0.77 +0.7 642,962 + GFF2586 0.77 +0.1 642,962 + GFF2586 0.77 -0.5 642,962 + GFF2586 0.77 +0.5 642,962 + GFF2586 0.77 +1.3 642,962 + GFF2586 0.77 -0.2 642,962 + GFF2586 0.77 -0.1 642,962 + GFF2586 0.77 -1.6 642,962 + GFF2586 0.77 +0.2 642,962 + GFF2586 0.77 -1.0 642,962 + GFF2586 0.77 +1.7 642,962 + GFF2586 0.77 +0.0 642,962 + GFF2586 0.77 +0.1 642,962 + GFF2586 0.77 -0.4 642,963 - GFF2586 0.77 +0.0 642,963 - GFF2586 0.77 -1.6 642,963 - GFF2586 0.77 -1.2 642,963 - GFF2586 0.77 +0.7 642,963 - GFF2586 0.77 +0.1 642,963 - GFF2586 0.77 +1.2 642,963 - GFF2586 0.77 -0.5 642,963 - GFF2586 0.77 -0.3 643,363 + -2.1 643,363 + +0.1 643,363 + -0.0 643,363 + -1.5 643,364 - -0.1 643,364 - +0.7 643,364 - +0.1 643,364 - +0.3 643,364 - -1.0 643,364 - -0.3 643,364 - +0.2 643,364 - +0.5 643,364 - +1.7 643,497 + GFF2587 0.51 +0.2 643,497 + GFF2587 0.51 +1.7 643,497 + GFF2587 0.51 -0.8 643,497 + GFF2587 0.51 -0.8 643,497 + GFF2587 0.51 +0.2 643,497 + GFF2587 0.51 -0.3 643,497 + GFF2587 0.51 +1.1 643,497 + GFF2587 0.51 -0.9 643,498 - GFF2587 0.51 -1.1 643,498 - GFF2587 0.51 +0.0 643,498 - GFF2587 0.51 -1.9 643,498 - GFF2587 0.51 -0.3 643,776 + -0.1 643,776 + -0.6 643,777 - -1.7
Or see this region's nucleotide sequence