Strain Fitness in Variovorax sp. SCN45 around GFF2355

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2354 and GFF2355 are separated by 28 nucleotidesGFF2355 and GFF2356 are separated by 6 nucleotidesGFF2356 and GFF2357 overlap by 4 nucleotides GFF2354 - FIG00555615: hypothetical protein, at 404,426 to 406,387 GFF2354 GFF2355 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 406,416 to 407,462 GFF2355 GFF2356 - RNase adapter protein RapZ, at 407,469 to 408,347 GFF2356 GFF2357 - DNA repair protein RecN, at 408,344 to 410,026 GFF2357 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1at 405.625 kb on + strand, within GFF2354at 405.626 kb on - strand, within GFF2354at 405.626 kb on - strand, within GFF2354at 405.626 kb on - strand, within GFF2354at 405.725 kb on + strand, within GFF2354at 405.725 kb on + strand, within GFF2354at 405.725 kb on + strand, within GFF2354at 405.725 kb on + strand, within GFF2354at 405.725 kb on + strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.726 kb on - strand, within GFF2354at 405.821 kb on + strand, within GFF2354at 405.821 kb on + strand, within GFF2354at 405.821 kb on + strand, within GFF2354at 405.821 kb on + strand, within GFF2354at 405.821 kb on + strand, within GFF2354at 405.822 kb on - strand, within GFF2354at 405.822 kb on - strand, within GFF2354at 406.016 kb on + strand, within GFF2354at 406.016 kb on + strand, within GFF2354at 406.017 kb on - strand, within GFF2354at 406.017 kb on - strand, within GFF2354at 406.017 kb on - strand, within GFF2354at 406.017 kb on - strand, within GFF2354at 406.017 kb on - strand, within GFF2354at 406.569 kb on + strand, within GFF2355at 406.570 kb on - strand, within GFF2355at 406.662 kb on + strand, within GFF2355at 406.662 kb on + strand, within GFF2355at 406.662 kb on + strand, within GFF2355at 406.665 kb on + strand, within GFF2355at 406.665 kb on + strand, within GFF2355at 406.665 kb on + strand, within GFF2355at 406.666 kb on - strand, within GFF2355at 406.968 kb on + strand, within GFF2355at 406.968 kb on + strand, within GFF2355at 406.968 kb on + strand, within GFF2355at 406.968 kb on + strand, within GFF2355at 406.968 kb on + strand, within GFF2355at 406.969 kb on - strand, within GFF2355at 406.969 kb on - strand, within GFF2355at 406.969 kb on - strand, within GFF2355at 407.460 kb on + strandat 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 408.049 kb on + strand, within GFF2356at 408.049 kb on + strand, within GFF2356at 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.265 kb on + strandat 408.266 kb on - strandat 408.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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405,625 + GFF2354 0.61 +0.0
405,626 - GFF2354 0.61 -0.1
405,626 - GFF2354 0.61 +0.6
405,626 - GFF2354 0.61 -0.7
405,725 + GFF2354 0.66 +0.3
405,725 + GFF2354 0.66 -0.1
405,725 + GFF2354 0.66 +0.0
405,725 + GFF2354 0.66 +0.3
405,725 + GFF2354 0.66 +0.2
405,726 - GFF2354 0.66 +0.9
405,726 - GFF2354 0.66 -0.4
405,726 - GFF2354 0.66 -0.6
405,726 - GFF2354 0.66 -0.9
405,726 - GFF2354 0.66 +0.3
405,726 - GFF2354 0.66 +0.0
405,821 + GFF2354 0.71 -0.2
405,821 + GFF2354 0.71 -0.5
405,821 + GFF2354 0.71 +0.4
405,821 + GFF2354 0.71 +1.0
405,821 + GFF2354 0.71 +0.5
405,822 - GFF2354 0.71 +0.7
405,822 - GFF2354 0.71 -0.1
406,016 + GFF2354 0.81 +0.4
406,016 + GFF2354 0.81 +0.9
406,017 - GFF2354 0.81 -0.3
406,017 - GFF2354 0.81 +0.1
406,017 - GFF2354 0.81 -0.6
406,017 - GFF2354 0.81 -0.1
406,017 - GFF2354 0.81 -0.2
406,569 + GFF2355 0.15 -0.0
406,570 - GFF2355 0.15 -0.5
406,662 + GFF2355 0.23 -0.0
406,662 + GFF2355 0.23 -0.4
406,662 + GFF2355 0.23 +1.1
406,665 + GFF2355 0.24 +0.1
406,665 + GFF2355 0.24 +0.0
406,665 + GFF2355 0.24 +0.4
406,666 - GFF2355 0.24 -0.5
406,968 + GFF2355 0.53 +0.3
406,968 + GFF2355 0.53 +0.8
406,968 + GFF2355 0.53 -0.4
406,968 + GFF2355 0.53 +0.4
406,968 + GFF2355 0.53 -1.4
406,969 - GFF2355 0.53 +0.0
406,969 - GFF2355 0.53 +0.6
406,969 - GFF2355 0.53 -0.9
407,460 + -0.5
407,596 + GFF2356 0.14 -0.4
407,596 + GFF2356 0.14 -0.5
407,596 + GFF2356 0.14 +0.3
407,596 + GFF2356 0.14 +1.2
407,596 + GFF2356 0.14 -1.2
407,596 + GFF2356 0.14 -0.6
407,597 - GFF2356 0.15 -1.3
407,597 - GFF2356 0.15 -0.8
407,597 - GFF2356 0.15 -1.0
407,597 - GFF2356 0.15 -0.6
407,597 - GFF2356 0.15 +0.9
407,659 + GFF2356 0.22 -1.0
407,659 + GFF2356 0.22 -0.5
407,659 + GFF2356 0.22 -1.1
407,659 + GFF2356 0.22 -0.5
407,659 + GFF2356 0.22 +0.1
407,659 + GFF2356 0.22 -1.0
407,660 - GFF2356 0.22 -0.1
407,660 - GFF2356 0.22 -0.3
407,660 - GFF2356 0.22 -0.3
407,660 - GFF2356 0.22 +0.3
407,660 - GFF2356 0.22 -0.4
407,660 - GFF2356 0.22 -1.3
407,743 + GFF2356 0.31 +0.6
407,743 + GFF2356 0.31 -1.9
407,743 + GFF2356 0.31 +1.7
407,743 + GFF2356 0.31 -1.4
407,743 + GFF2356 0.31 +0.3
407,743 + GFF2356 0.31 +0.1
407,743 + GFF2356 0.31 -0.1
407,744 - GFF2356 0.31 -0.3
407,744 - GFF2356 0.31 -0.6
407,744 - GFF2356 0.31 -0.6
407,779 + GFF2356 0.35 +0.1
407,779 + GFF2356 0.35 -0.3
407,779 + GFF2356 0.35 +0.3
407,780 - GFF2356 0.35 +0.7
407,780 - GFF2356 0.35 +0.1
407,780 - GFF2356 0.35 -2.1
407,780 - GFF2356 0.35 -0.7
407,780 - GFF2356 0.35 -1.1
407,872 + GFF2356 0.46 -1.6
407,872 + GFF2356 0.46 -0.9
407,872 + GFF2356 0.46 -1.2
407,872 + GFF2356 0.46 -0.6
407,873 - GFF2356 0.46 -1.9
407,873 - GFF2356 0.46 -2.1
407,873 - GFF2356 0.46 -0.7
407,873 - GFF2356 0.46 -0.9
407,873 - GFF2356 0.46 -0.5
407,873 - GFF2356 0.46 -0.4
407,873 - GFF2356 0.46 -1.3
407,873 - GFF2356 0.46 -1.6
407,873 - GFF2356 0.46 -1.6
407,873 - GFF2356 0.46 -0.4
407,873 - GFF2356 0.46 -0.2
407,873 - GFF2356 0.46 +0.1
408,049 + GFF2356 0.66 +0.6
408,049 + GFF2356 0.66 -0.5
408,262 + -1.1
408,262 + -1.3
408,262 + -3.0
408,262 + -1.1
408,262 + -0.0
408,263 - -1.3
408,263 - -1.2
408,263 - -0.0
408,263 - +1.1
408,263 - -0.7
408,263 - -0.4
408,265 + -1.5
408,266 - -0.7
408,266 - -0.3

Or see this region's nucleotide sequence