Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2325 and GFF2326 are separated by 285 nucleotides GFF2326 and GFF2327 are separated by 0 nucleotides GFF2327 and GFF2328 are separated by 51 nucleotides
GFF2325 - Methyl-accepting chemotaxis sensor/transducer protein, at 375,846 to 377,537
GFF2325
GFF2326 - Transcriptional regulator, LysR family, at 377,823 to 378,725
GFF2326
GFF2327 - Hydrolase, alpha/beta fold family, at 378,726 to 379,493
GFF2327
GFF2328 - no description, at 379,545 to 380,186
GFF2328
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 377.068 kb on + strand, within GFF2325 at 377.170 kb on + strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.242 kb on - strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.342 kb on + strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.343 kb on - strand, within GFF2325 at 377.365 kb on + strand, within GFF2325 at 377.437 kb on + strand at 377.437 kb on + strand at 377.437 kb on + strand at 377.438 kb on - strand at 377.438 kb on - strand at 377.540 kb on + strand at 377.540 kb on + strand at 377.541 kb on - strand at 377.602 kb on + strand at 377.603 kb on - strand at 377.603 kb on - strand at 377.622 kb on - strand at 377.649 kb on - strand at 377.666 kb on + strand at 377.666 kb on + strand at 377.667 kb on - strand at 377.673 kb on + strand at 377.677 kb on + strand at 377.678 kb on - strand at 377.773 kb on + strand at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.331 kb on - strand, within GFF2326 at 378.603 kb on + strand, within GFF2326 at 378.637 kb on - strand at 379.016 kb on - strand, within GFF2327 at 379.017 kb on - strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.112 kb on - strand, within GFF2327 at 379.419 kb on + strand at 379.419 kb on + strand at 379.419 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.513 kb on - strand at 379.638 kb on + strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 377,068 + GFF2325 0.72 -0.2 377,170 + GFF2325 0.78 -0.3 377,242 - GFF2325 0.83 +0.1 377,242 - GFF2325 0.83 -2.2 377,342 + GFF2325 0.88 +0.4 377,342 + GFF2325 0.88 -0.3 377,342 + GFF2325 0.88 -0.1 377,342 + GFF2325 0.88 -1.4 377,343 - GFF2325 0.88 -0.5 377,343 - GFF2325 0.88 +0.4 377,343 - GFF2325 0.88 -1.1 377,343 - GFF2325 0.88 -0.4 377,365 + GFF2325 0.90 -1.1 377,437 + -0.6 377,437 + -2.7 377,437 + +1.4 377,438 - +0.6 377,438 - +0.1 377,540 + -0.6 377,540 + +0.6 377,541 - -0.5 377,602 + +0.4 377,603 - -0.1 377,603 - -0.9 377,622 - -0.7 377,649 - +0.0 377,666 + +1.7 377,666 + -1.4 377,667 - +0.0 377,673 + -0.7 377,677 + -1.7 377,678 - -0.8 377,773 + -0.0 378,330 + GFF2326 0.56 -1.5 378,330 + GFF2326 0.56 -0.7 378,330 + GFF2326 0.56 -0.5 378,330 + GFF2326 0.56 -1.6 378,331 - GFF2326 0.56 -0.4 378,603 + GFF2326 0.86 -1.2 378,637 - +0.5 379,016 - GFF2327 0.38 -1.1 379,017 - GFF2327 0.38 +0.1 379,066 + GFF2327 0.44 -0.9 379,066 + GFF2327 0.44 -1.0 379,066 + GFF2327 0.44 -1.0 379,112 - GFF2327 0.50 -0.4 379,419 + +0.4 379,419 + -1.9 379,419 + -1.4 379,471 + -0.2 379,471 + -1.0 379,471 + -1.2 379,472 - -0.7 379,472 - +0.1 379,472 - -0.4 379,472 - -0.4 379,512 + -0.6 379,512 + -2.4 379,512 + -2.2 379,512 + -0.6 379,512 + -0.0 379,513 - -0.0 379,638 + GFF2328 0.14 +0.4 379,648 - GFF2328 0.16 -0.3 379,648 - GFF2328 0.16 -2.4 379,648 - GFF2328 0.16 -0.6
Or see this region's nucleotide sequence