Strain Fitness in Variovorax sp. SCN45 around GFF2267

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2265 and GFF2266 are separated by 5 nucleotidesGFF2266 and GFF2267 are separated by 90 nucleotidesGFF2267 and GFF2268 are separated by 100 nucleotidesGFF2268 and GFF2269 are separated by 70 nucleotides GFF2265 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 320,523 to 321,356 GFF2265 GFF2266 - FIG00441126: hypothetical protein, at 321,362 to 321,967 GFF2266 GFF2267 - Integral membrane protein, at 322,058 to 322,816 GFF2267 GFF2268 - Protein of unknown function DUF1428, at 322,917 to 323,276 GFF2268 GFF2269 - Uncharacterized MFS-type transporter, at 323,347 to 324,813 GFF2269 Position (kb) 322 323Strain fitness (log2 ratio) -2 -1 0 1at 321.093 kb on + strand, within GFF2265at 321.195 kb on + strand, within GFF2265at 321.506 kb on + strand, within GFF2266at 321.506 kb on + strand, within GFF2266at 321.689 kb on + strand, within GFF2266at 321.690 kb on - strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.746 kb on + strand, within GFF2266at 321.747 kb on - strand, within GFF2266at 321.747 kb on - strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.845 kb on + strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.846 kb on - strand, within GFF2266at 321.920 kb on + strandat 321.966 kb on - strandat 322.008 kb on + strandat 322.085 kb on + strandat 322.085 kb on + strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.086 kb on - strandat 322.091 kb on + strandat 322.091 kb on + strandat 322.092 kb on - strandat 322.092 kb on - strandat 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.748 kb on + strandat 322.749 kb on - strandat 322.749 kb on - strandat 322.797 kb on - strandat 322.807 kb on + strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.162 kb on - strand, within GFF2268at 323.177 kb on - strand, within GFF2268at 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.263 kb on - strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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321,093 + GFF2265 0.68 -0.0
321,195 + GFF2265 0.81 +0.6
321,506 + GFF2266 0.24 -0.3
321,506 + GFF2266 0.24 +0.2
321,689 + GFF2266 0.54 +1.3
321,690 - GFF2266 0.54 -0.4
321,746 + GFF2266 0.63 +0.3
321,746 + GFF2266 0.63 -0.4
321,746 + GFF2266 0.63 -0.0
321,747 - GFF2266 0.64 -0.8
321,747 - GFF2266 0.64 -0.2
321,845 + GFF2266 0.80 -0.1
321,845 + GFF2266 0.80 -0.5
321,845 + GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 -1.8
321,846 - GFF2266 0.80 -2.2
321,846 - GFF2266 0.80 -0.4
321,846 - GFF2266 0.80 +0.2
321,846 - GFF2266 0.80 +1.5
321,846 - GFF2266 0.80 +1.7
321,846 - GFF2266 0.80 +0.1
321,846 - GFF2266 0.80 +1.0
321,846 - GFF2266 0.80 -1.6
321,846 - GFF2266 0.80 +0.1
321,920 + +0.1
321,966 - +0.7
322,008 + -0.5
322,085 + -0.5
322,085 + +0.0
322,086 - +1.2
322,086 - -0.5
322,086 - -2.6
322,091 + -0.6
322,091 + +0.9
322,092 - +0.2
322,092 - -0.3
322,535 + GFF2267 0.63 +0.6
322,535 + GFF2267 0.63 -0.0
322,535 + GFF2267 0.63 -1.2
322,535 + GFF2267 0.63 +0.5
322,535 + GFF2267 0.63 +0.4
322,536 - GFF2267 0.63 +0.6
322,536 - GFF2267 0.63 +0.1
322,536 - GFF2267 0.63 +0.2
322,536 - GFF2267 0.63 -0.6
322,536 - GFF2267 0.63 -0.1
322,536 - GFF2267 0.63 +0.3
322,536 - GFF2267 0.63 -2.2
322,536 - GFF2267 0.63 +0.4
322,586 + GFF2267 0.70 -0.4
322,586 + GFF2267 0.70 +1.2
322,586 + GFF2267 0.70 +1.3
322,587 - GFF2267 0.70 -0.7
322,587 - GFF2267 0.70 -0.1
322,748 + -1.1
322,749 - -0.0
322,749 - -1.0
322,797 - +0.6
322,807 + +0.7
322,808 - +0.4
322,808 - -0.7
322,808 - -0.4
322,808 - -0.2
323,056 + GFF2268 0.39 +0.2
323,056 + GFF2268 0.39 -0.1
323,056 + GFF2268 0.39 -1.4
323,056 + GFF2268 0.39 +0.5
323,056 + GFF2268 0.39 -0.1
323,056 + GFF2268 0.39 -2.2
323,057 - GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 +0.4
323,057 - GFF2268 0.39 +0.7
323,057 - GFF2268 0.39 -0.4
323,161 + GFF2268 0.68 -0.8
323,161 + GFF2268 0.68 +0.4
323,162 - GFF2268 0.68 +0.7
323,177 - GFF2268 0.72 +0.2
323,262 + -0.5
323,262 + +0.0
323,262 + -0.7
323,262 + -0.4
323,262 + +0.2
323,263 - -0.4
323,266 + +1.1
323,266 + -0.2
323,266 + +0.2
323,267 - -0.7
323,267 - -0.0
323,267 - +0.2
323,489 + -1.1

Or see this region's nucleotide sequence