Strain Fitness in Variovorax sp. SCN45 around GFF2064

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
110,746	+		GFF2063	0.31	+0.9
110,746	+		GFF2063	0.31	-1.3
110,746	+		GFF2063	0.31	-0.7
110,746	+		GFF2063	0.31	+0.0
110,746	+		GFF2063	0.31	-0.6
110,746	+		GFF2063	0.31	-0.7
110,746	+		GFF2063	0.31	-0.6
110,746	+		GFF2063	0.31	-0.3
110,747	-		GFF2063	0.32	-1.0
110,747	-		GFF2063	0.32	+0.1
110,747	-		GFF2063	0.32	+0.6
110,747	-		GFF2063	0.32	-0.2
110,790	+		GFF2063	0.35	-0.8
110,790	+		GFF2063	0.35	+0.2
110,790	+		GFF2063	0.35	-0.5
110,790	+		GFF2063	0.35	-0.5
110,790	+		GFF2063	0.35	-0.4
110,790	+		GFF2063	0.35	+0.2
110,791	-		GFF2063	0.35	+0.0
110,791	-		GFF2063	0.35	-0.1
110,791	-		GFF2063	0.35	-0.4
110,791	-		GFF2063	0.35	+0.5
110,791	-		GFF2063	0.35	-1.0
110,791	-		GFF2063	0.35	-0.6
110,791	-		GFF2063	0.35	+0.3
110,791	-		GFF2063	0.35	-0.5
110,791	-		GFF2063	0.35	+0.0
110,862	+		GFF2063	0.40	-0.5
110,862	+		GFF2063	0.40	+0.2
110,862	+		GFF2063	0.40	+0.3
110,862	+		GFF2063	0.40	-0.7
110,862	+		GFF2063	0.40	+0.6
110,862	+		GFF2063	0.40	-0.8
110,862	+		GFF2063	0.40	-0.2
110,862	+		GFF2063	0.40	+1.0
110,862	+		GFF2063	0.40	-0.8
110,862	+		GFF2063	0.40	-0.6
110,862	+		GFF2063	0.40	-0.2
110,862	+		GFF2063	0.40	-0.4
110,862	+		GFF2063	0.40	+0.2
110,862	+		GFF2063	0.40	+0.8
110,862	+		GFF2063	0.40	+1.1
110,862	+		GFF2063	0.40	-0.9
110,862	+		GFF2063	0.40	-0.9
110,862	+		GFF2063	0.40	-0.1
110,863	-		GFF2063	0.40	-0.2
110,863	-		GFF2063	0.40	-0.8
110,863	-		GFF2063	0.40	+0.2
110,863	-		GFF2063	0.40	-0.0
110,863	-		GFF2063	0.40	+0.4
110,863	-		GFF2063	0.40	-0.6
110,863	-		GFF2063	0.40	-2.1
110,863	-		GFF2063	0.40	-0.3
110,863	-		GFF2063	0.40	-2.1
110,863	-		GFF2063	0.40	-0.5
110,863	-		GFF2063	0.40	-0.5
110,863	-		GFF2063	0.40	+0.4
110,863	-		GFF2063	0.40	-0.1
110,863	-		GFF2063	0.40	-2.4
110,863	-		GFF2063	0.40	+0.5
110,863	-		GFF2063	0.40	-0.7
110,863	-		GFF2063	0.40	-1.4
110,863	-		GFF2063	0.40	-1.4
110,863	-		GFF2063	0.40	+0.7
110,863	-		GFF2063	0.40	+0.1
110,863	-		GFF2063	0.40	+0.3
110,863	-		GFF2063	0.40	+0.2
110,863	-		GFF2063	0.40	+1.0
110,863	-		GFF2063	0.40	-1.6
110,863	-		GFF2063	0.40	-0.8
110,942	+		GFF2063	0.45	+0.2
110,942	+		GFF2063	0.45	-0.3
110,942	+		GFF2063	0.45	-2.4
110,942	+		GFF2063	0.45	-0.2
110,942	+		GFF2063	0.45	-0.3
110,942	+		GFF2063	0.45	-0.3
110,942	+		GFF2063	0.45	+0.4
110,942	+		GFF2063	0.45	-1.1
110,943	-		GFF2063	0.45	-0.2
110,943	-		GFF2063	0.45	-0.0
110,943	-		GFF2063	0.45	-1.6
111,027	+		GFF2063	0.51	+1.1
111,027	+		GFF2063	0.51	-0.6
111,028	-		GFF2063	0.51	-0.1
111,186	+		GFF2063	0.62	+0.2
111,187	-		GFF2063	0.62	+0.1
111,187	-		GFF2063	0.62	+0.0
111,187	-		GFF2063	0.62	+0.2
111,552	+		GFF2063	0.88	-0.4
111,552	+		GFF2063	0.88	+0.2
111,552	+		GFF2063	0.88	-0.2
111,552	+		GFF2063	0.88	+0.3
111,552	+		GFF2063	0.88	-0.4
111,553	-		GFF2063	0.88	-0.1
111,553	-		GFF2063	0.88	+0.2
111,553	-		GFF2063	0.88	-0.6
111,553	-		GFF2063	0.88	-0.2
111,553	-		GFF2063	0.88	-0.6
111,553	-		GFF2063	0.88	-0.2
111,553	-		GFF2063	0.88	-0.7
111,706	+				-0.9
111,707	-				-0.2
111,707	-				-1.7
111,746	+				-1.4
111,746	+				-0.4
111,746	+				-0.6
111,746	+				-0.3
111,746	+				-0.3
111,746	+				+1.0
111,746	+				-0.1
111,746	+				+0.6
111,746	+				-0.2
111,746	+				+1.4
111,746	+				-0.8
111,747	-				-0.1
111,747	-				+0.8
111,747	-				-0.1
111,747	-				+2.1
111,747	-				-0.3
111,747	-				-0.1
111,747	-				-1.1
111,747	-				-0.7
111,747	-				+0.2
112,145	+		GFF2064	0.36	-0.7
112,145	+		GFF2064	0.36	-0.2
112,145	+		GFF2064	0.36	+0.4
112,145	+		GFF2064	0.36	-0.0
112,145	+		GFF2064	0.36	-0.3
112,145	+		GFF2064	0.36	-0.2
112,145	+		GFF2064	0.36	+0.4
112,145	+		GFF2064	0.36	+0.4
112,145	+		GFF2064	0.36	-0.6
112,145	+		GFF2064	0.36	-1.2
112,145	+		GFF2064	0.36	-0.9
112,145	+		GFF2064	0.36	-0.8
112,146	-		GFF2064	0.36	-0.4
112,146	-		GFF2064	0.36	+0.3
112,146	-		GFF2064	0.36	-0.6
112,146	-		GFF2064	0.36	-0.2
112,146	-		GFF2064	0.36	+1.8
112,146	-		GFF2064	0.36	+0.4
112,146	-		GFF2064	0.36	-0.7
112,146	-		GFF2064	0.36	-0.1
112,146	-		GFF2064	0.36	-0.7
112,146	-		GFF2064	0.36	+0.8
112,146	-		GFF2064	0.36	+0.0
112,523	+		GFF2064	0.70	-0.5
112,524	-		GFF2064	0.70	-1.5
112,524	-		GFF2064	0.70	-0.4
112,524	-		GFF2064	0.70	-0.3
112,643	+		GFF2064	0.81	-0.4
112,643	+		GFF2064	0.81	-0.1
112,643	+		GFF2064	0.81	+0.2
112,643	+		GFF2064	0.81	-0.4
112,643	+		GFF2064	0.81	-1.1
112,643	+		GFF2064	0.81	-0.1
112,643	+		GFF2064	0.81	-1.6
112,644	-		GFF2064	0.81	-0.2
112,644	-		GFF2064	0.81	+0.8
112,644	-		GFF2064	0.81	-1.1
112,644	-		GFF2064	0.81	-1.6
112,644	-		GFF2064	0.81	-0.9
112,644	-		GFF2064	0.81	-0.4
112,757	+				-0.2
112,757	+				+1.3
112,757	+				-0.5
113,042	+		GFF2065	0.10	-0.2
113,042	+		GFF2065	0.10	-0.3
113,042	+		GFF2065	0.10	-1.0
113,042	+		GFF2065	0.10	+0.2
113,043	-		GFF2065	0.10	-0.8
113,043	-		GFF2065	0.10	-0.1
113,043	-		GFF2065	0.10	-0.1
113,174	+		GFF2065	0.20	+2.0
113,174	+		GFF2065	0.20	-0.0
113,174	+		GFF2065	0.20	-0.4
113,174	+		GFF2065	0.20	+0.7
113,175	-		GFF2065	0.20	-1.3
113,175	-		GFF2065	0.20	+0.1
113,175	-		GFF2065	0.20	+0.3
113,297	+		GFF2065	0.29	+0.1
113,298	-		GFF2065	0.29	+1.2
113,396	+		GFF2065	0.37	-0.3
113,396	+		GFF2065	0.37	-0.5
113,396	+		GFF2065	0.37	+0.5
113,396	+		GFF2065	0.37	+0.0
113,397	-		GFF2065	0.37	-0.8
113,397	-		GFF2065	0.37	-0.4
113,397	-		GFF2065	0.37	-0.0
113,397	-		GFF2065	0.37	-1.2
113,397	-		GFF2065	0.37	-0.9
113,429	+		GFF2065	0.39	-1.2
113,429	+		GFF2065	0.39	+0.1
113,429	+		GFF2065	0.39	+0.0
113,430	-		GFF2065	0.39	-0.3
113,430	-		GFF2065	0.39	+1.2
113,430	-		GFF2065	0.39	+0.2
113,430	-		GFF2065	0.39	+1.1
113,432	+		GFF2065	0.39	-1.6
113,432	+		GFF2065	0.39	-0.1
113,432	+		GFF2065	0.39	-0.0
113,432	+		GFF2065	0.39	-0.2
113,432	+		GFF2065	0.39	-0.0
113,432	+		GFF2065	0.39	+0.5
113,432	+		GFF2065	0.39	+1.0
113,432	+		GFF2065	0.39	-0.1
113,432	+		GFF2065	0.39	-0.2
113,432	+		GFF2065	0.39	-0.9
113,432	+		GFF2065	0.39	-0.8
113,432	+		GFF2065	0.39	-0.2
113,432	+		GFF2065	0.39	-0.8
113,432	+		GFF2065	0.39	-0.0
113,432	+		GFF2065	0.39	+0.4
113,432	+		GFF2065	0.39	-0.4
113,433	-		GFF2065	0.39	-0.2
113,433	-		GFF2065	0.39	+0.7
113,433	-		GFF2065	0.39	+0.6
113,433	-		GFF2065	0.39	-1.6
113,433	-		GFF2065	0.39	-0.4
113,433	-		GFF2065	0.39	-0.3
113,433	-		GFF2065	0.39	-0.2
113,433	-		GFF2065	0.39	+0.0
113,433	-		GFF2065	0.39	-0.4
113,433	-		GFF2065	0.39	-0.8
113,433	-		GFF2065	0.39	-1.8
113,433	-		GFF2065	0.39	+1.1
113,433	-		GFF2065	0.39	-0.7
113,433	-		GFF2065	0.39	+0.1
113,433	-		GFF2065	0.39	-0.1
113,433	-		GFF2065	0.39	-0.6
113,433	-		GFF2065	0.39	-0.2
113,433	-		GFF2065	0.39	+0.2
113,433	-		GFF2065	0.39	+1.8
113,433	-		GFF2065	0.39	-0.0
113,433	-		GFF2065	0.39	+0.4
113,433	-		GFF2065	0.39	-0.2
113,561	+		GFF2065	0.49	-1.4
113,561	+		GFF2065	0.49	+0.1
113,561	+		GFF2065	0.49	-0.7
113,561	+		GFF2065	0.49	+0.1
113,561	+		GFF2065	0.49	+0.3
113,562	-		GFF2065	0.49	+0.1
113,562	-		GFF2065	0.49	-2.0
113,562	-		GFF2065	0.49	+0.1
113,562	-		GFF2065	0.49	-0.2
113,562	-		GFF2065	0.49	-0.7
113,562	-		GFF2065	0.49	+0.2
113,562	-		GFF2065	0.49	-0.7
113,562	-		GFF2065	0.49	+0.4
113,562	-		GFF2065	0.49	-1.0
113,562	-		GFF2065	0.49	-0.3
113,562	-		GFF2065	0.49	-0.6
113,562	-		GFF2065	0.49	-0.8
113,562	-		GFF2065	0.49	+0.5
113,562	-		GFF2065	0.49	-0.6
113,688	+		GFF2065	0.58	+1.0
113,688	+		GFF2065	0.58	-0.3
113,688	+		GFF2065	0.58	-0.6
113,688	+		GFF2065	0.58	+0.4
113,688	+		GFF2065	0.58	-0.4
113,688	+		GFF2065	0.58	-0.1
113,688	+		GFF2065	0.58	-1.6
113,689	-		GFF2065	0.58	-1.9
113,689	-		GFF2065	0.58	-1.5
113,689	-		GFF2065	0.58	-0.6
113,689	-		GFF2065	0.58	-0.4
113,689	-		GFF2065	0.58	-0.2
113,689	-		GFF2065	0.58	-1.4
113,689	-		GFF2065	0.58	-0.7
113,689	-		GFF2065	0.58	-0.9
113,780	+		GFF2065	0.65	+0.0
113,780	+		GFF2065	0.65	-0.5
113,780	+		GFF2065	0.65	-0.4
113,780	+		GFF2065	0.65	-0.8
113,780	+		GFF2065	0.65	+0.2
113,780	+		GFF2065	0.65	-0.5
113,780	+		GFF2065	0.65	-0.2
113,780	+		GFF2065	0.65	+0.3
113,781	-		GFF2065	0.65	+1.5
113,781	-		GFF2065	0.65	-0.2
113,781	-		GFF2065	0.65	-0.3
113,781	-		GFF2065	0.65	-0.0
113,781	-		GFF2065	0.65	-1.2
113,781	-		GFF2065	0.65	-0.4