Strain Fitness in Variovorax sp. SCN45 around GFF191

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF189 and GFF190 are separated by 43 nucleotidesGFF190 and GFF191 overlap by 1 nucleotidesGFF191 and GFF192 are separated by 117 nucleotidesGFF192 and GFF193 overlap by 4 nucleotides GFF189 - Negative transcriptional regulator, at 219,422 to 220,066 GFF189 GFF190 - Ankyrin, at 220,110 to 220,808 GFF190 GFF191 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 220,808 to 221,308 GFF191 GFF192 - Nitrogen regulation protein NR(I), GlnG (=NtrC), at 221,426 to 222,067 GFF192 GFF193 - Two-component sensor PilS, at 222,064 to 223,569 GFF193 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.864 kb on + strand, within GFF189at 219.865 kb on - strand, within GFF189at 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.111 kb on + strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.438 kb on - strand, within GFF190at 220.501 kb on + strand, within GFF190at 220.502 kb on - strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.960 kb on - strand, within GFF191at 220.960 kb on - strand, within GFF191at 220.960 kb on - strand, within GFF191at 221.145 kb on + strand, within GFF191at 221.145 kb on + strand, within GFF191at 221.146 kb on - strand, within GFF191at 221.146 kb on - strand, within GFF191at 221.146 kb on - strand, within GFF191at 221.146 kb on - strand, within GFF191at 221.370 kb on + strandat 221.371 kb on - strandat 221.399 kb on + strandat 221.400 kb on - strandat 221.421 kb on + strandat 221.422 kb on - strandat 221.427 kb on + strandat 221.428 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
219,813 + GFF189 0.61 -1.8
219,813 + GFF189 0.61 +0.7
219,813 + GFF189 0.61 -0.7
219,813 + GFF189 0.61 -0.4
219,813 + GFF189 0.61 -0.5
219,813 + GFF189 0.61 +1.3
219,813 + GFF189 0.61 -0.8
219,813 + GFF189 0.61 -1.2
219,813 + GFF189 0.61 -1.5
219,813 + GFF189 0.61 +0.3
219,813 + GFF189 0.61 -0.4
219,813 + GFF189 0.61 -1.8
219,813 + GFF189 0.61 +1.3
219,813 + GFF189 0.61 -0.3
219,813 + GFF189 0.61 -0.5
219,813 + GFF189 0.61 +1.3
219,813 + GFF189 0.61 +0.7
219,813 + GFF189 0.61 +1.6
219,813 + GFF189 0.61 -0.1
219,813 + GFF189 0.61 +1.3
219,814 - GFF189 0.61 -1.0
219,814 - GFF189 0.61 +0.2
219,814 - GFF189 0.61 -1.2
219,814 - GFF189 0.61 +1.3
219,814 - GFF189 0.61 +0.1
219,814 - GFF189 0.61 -0.3
219,814 - GFF189 0.61 +1.0
219,814 - GFF189 0.61 -0.4
219,814 - GFF189 0.61 -0.9
219,814 - GFF189 0.61 +0.3
219,814 - GFF189 0.61 -0.6
219,814 - GFF189 0.61 -1.9
219,814 - GFF189 0.61 -0.1
219,814 - GFF189 0.61 -0.3
219,814 - GFF189 0.61 -1.5
219,814 - GFF189 0.61 -0.1
219,814 - GFF189 0.61 -0.1
219,814 - GFF189 0.61 -0.2
219,814 - GFF189 0.61 -0.3
219,814 - GFF189 0.61 -0.5
219,814 - GFF189 0.61 -0.3
219,864 + GFF189 0.69 -0.6
219,865 - GFF189 0.69 +0.3
220,062 + -1.3
220,062 + -0.2
220,062 + -0.9
220,062 + +0.2
220,062 + -0.1
220,062 + -0.2
220,062 + +1.1
220,062 + -0.5
220,062 + -1.9
220,062 + -0.9
220,062 + -0.4
220,062 + -0.5
220,062 + -0.3
220,062 + -0.1
220,062 + -0.2
220,062 + +0.3
220,062 + +0.8
220,062 + -0.7
220,062 + -1.9
220,062 + -0.7
220,062 + +0.8
220,062 + -0.3
220,062 + -0.4
220,062 + -0.5
220,062 + -1.0
220,063 - -0.6
220,063 - +0.3
220,063 - +0.7
220,063 - +1.7
220,063 - +0.3
220,063 - -0.6
220,063 - -0.1
220,063 - -1.7
220,063 - -0.0
220,063 - -0.4
220,063 - -0.5
220,111 + -1.3
220,112 - +1.0
220,112 - +0.3
220,438 - GFF190 0.47 -1.1
220,501 + GFF190 0.56 -1.3
220,502 - GFF190 0.56 +0.7
220,699 + GFF190 0.84 -0.2
220,699 + GFF190 0.84 -0.5
220,699 + GFF190 0.84 -0.2
220,700 - GFF190 0.84 +0.0
220,700 - GFF190 0.84 -0.1
220,700 - GFF190 0.84 -0.2
220,700 - GFF190 0.84 -0.7
220,700 - GFF190 0.84 -0.6
220,700 - GFF190 0.84 -0.1
220,959 + GFF191 0.30 +0.7
220,959 + GFF191 0.30 +0.4
220,959 + GFF191 0.30 +0.2
220,959 + GFF191 0.30 -0.1
220,959 + GFF191 0.30 +0.2
220,959 + GFF191 0.30 -0.7
220,959 + GFF191 0.30 +0.5
220,959 + GFF191 0.30 -1.5
220,959 + GFF191 0.30 -0.5
220,959 + GFF191 0.30 -0.3
220,960 - GFF191 0.30 -1.0
220,960 - GFF191 0.30 +1.3
220,960 - GFF191 0.30 +0.7
221,145 + GFF191 0.67 -0.0
221,145 + GFF191 0.67 +0.3
221,146 - GFF191 0.67 +0.1
221,146 - GFF191 0.67 -0.1
221,146 - GFF191 0.67 +0.7
221,146 - GFF191 0.67 -0.5
221,370 + -0.1
221,371 - +0.4
221,399 + +2.2
221,400 - -0.0
221,421 + -0.4
221,422 - -0.3
221,427 + +0.5
221,428 - -2.2

Or see this region's nucleotide sequence