Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1897 and GFF1898 are separated by 122 nucleotides GFF1898 and GFF1899 overlap by 6 nucleotides
GFF1897 - Two-component system sensor histidine kinase/response regulator hybrid, at 571,169 to 573,343
GFF1897
GFF1898 - Phosphoserine phosphatase (EC 3.1.3.3), at 573,466 to 574,119
GFF1898
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1 at 572.533 kb on - strand, within GFF1897 at 572.599 kb on - strand, within GFF1897 at 572.658 kb on + strand, within GFF1897 at 572.659 kb on - strand, within GFF1897 at 572.860 kb on - strand, within GFF1897 at 572.899 kb on - strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 572.988 kb on + strand, within GFF1897 at 573.030 kb on + strand, within GFF1897 at 573.031 kb on - strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.120 kb on + strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.121 kb on - strand, within GFF1897 at 573.126 kb on + strand at 573.126 kb on + strand at 573.126 kb on + strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.127 kb on - strand at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.823 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.991 kb on + strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.992 kb on - strand, within GFF1898 at 573.998 kb on - strand, within GFF1898 at 574.223 kb on + strand at 574.574 kb on + strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.593 kb on - strand, within GFF1899 at 574.605 kb on - strand, within GFF1899 at 574.707 kb on - strand, within GFF1899 at 574.718 kb on + strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.719 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899 at 574.734 kb on - strand, within GFF1899
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 572,533 - GFF1897 0.63 -1.0 572,599 - GFF1897 0.66 -1.3 572,658 + GFF1897 0.68 -1.2 572,659 - GFF1897 0.69 +0.6 572,860 - GFF1897 0.78 -0.4 572,899 - GFF1897 0.80 -1.1 572,988 + GFF1897 0.84 +0.2 572,988 + GFF1897 0.84 -0.2 572,988 + GFF1897 0.84 -0.4 573,030 + GFF1897 0.86 +0.2 573,031 - GFF1897 0.86 +1.1 573,120 + GFF1897 0.90 +0.1 573,120 + GFF1897 0.90 +0.0 573,121 - GFF1897 0.90 -0.5 573,121 - GFF1897 0.90 +0.4 573,121 - GFF1897 0.90 -1.2 573,126 + -0.4 573,126 + -0.3 573,126 + -0.6 573,127 - +0.3 573,127 - -0.4 573,127 - +0.6 573,127 - -0.1 573,127 - -0.1 573,127 - -0.8 573,823 + GFF1898 0.55 -1.0 573,823 + GFF1898 0.55 +0.3 573,823 + GFF1898 0.55 -1.2 573,991 + GFF1898 0.80 -1.0 573,991 + GFF1898 0.80 +0.3 573,991 + GFF1898 0.80 -0.0 573,991 + GFF1898 0.80 -1.1 573,992 - GFF1898 0.80 -0.7 573,992 - GFF1898 0.80 -0.4 573,998 - GFF1898 0.81 -0.6 574,223 + +0.1 574,574 + GFF1899 0.13 +0.2 574,593 - GFF1899 0.14 +0.1 574,593 - GFF1899 0.14 +0.4 574,593 - GFF1899 0.14 -0.4 574,605 - GFF1899 0.14 +0.2 574,707 - GFF1899 0.17 +1.0 574,718 + GFF1899 0.17 -0.4 574,719 - GFF1899 0.17 -0.0 574,719 - GFF1899 0.17 -1.1 574,734 - GFF1899 0.17 -0.3 574,734 - GFF1899 0.17 -1.0
Or see this region's nucleotide sequence