Strain Fitness in Variovorax sp. SCN45 around GFF1842

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1841 and GFF1842 are separated by 103 nucleotidesGFF1842 and GFF1843 are separated by 194 nucleotides GFF1841 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 509,540 to 512,008 GFF1841 GFF1842 - Transcriptional regulator, LysR family, at 512,112 to 513,092 GFF1842 GFF1843 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 513,287 to 514,570 GFF1843 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.418 kb on + strand, within GFF1841at 511.418 kb on + strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.419 kb on - strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.454 kb on + strand, within GFF1841at 511.455 kb on - strand, within GFF1841at 511.455 kb on - strand, within GFF1841at 511.508 kb on + strand, within GFF1841at 511.508 kb on + strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.509 kb on - strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.511 kb on + strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.512 kb on - strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.514 kb on + strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.515 kb on - strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.739 kb on + strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 511.740 kb on - strand, within GFF1841at 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.074 kb on + strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.075 kb on - strandat 512.076 kb on + strandat 512.076 kb on + strandat 512.076 kb on + strandat 512.077 kb on - strandat 512.220 kb on + strand, within GFF1842at 512.220 kb on + strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.221 kb on - strand, within GFF1842at 512.439 kb on + strand, within GFF1842at 512.439 kb on + strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.440 kb on - strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.538 kb on + strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.539 kb on - strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.874 kb on + strand, within GFF1842at 512.875 kb on - strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.946 kb on + strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.947 kb on - strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.949 kb on + strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 512.950 kb on - strand, within GFF1842at 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.365 kb on + strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.366 kb on - strandat 513.476 kb on + strand, within GFF1843at 513.476 kb on + strand, within GFF1843at 513.486 kb on - strand, within GFF1843at 513.486 kb on - strand, within GFF1843at 513.525 kb on - strand, within GFF1843at 513.533 kb on + strand, within GFF1843at 513.534 kb on - strand, within GFF1843at 513.534 kb on - strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.557 kb on + strand, within GFF1843at 513.558 kb on - strand, within GFF1843at 513.558 kb on - strand, within GFF1843at 513.645 kb on + strand, within GFF1843at 513.654 kb on + strand, within GFF1843at 513.654 kb on + strand, within GFF1843

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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511,418 + GFF1841 0.76 -0.6
511,418 + GFF1841 0.76 +0.7
511,419 - GFF1841 0.76 -0.3
511,419 - GFF1841 0.76 -1.9
511,419 - GFF1841 0.76 -0.8
511,419 - GFF1841 0.76 -0.7
511,454 + GFF1841 0.78 +1.7
511,454 + GFF1841 0.78 -0.6
511,454 + GFF1841 0.78 -0.9
511,455 - GFF1841 0.78 +0.0
511,455 - GFF1841 0.78 -0.6
511,508 + GFF1841 0.80 -1.0
511,508 + GFF1841 0.80 -1.9
511,509 - GFF1841 0.80 -0.8
511,509 - GFF1841 0.80 -0.1
511,509 - GFF1841 0.80 -0.1
511,509 - GFF1841 0.80 +1.9
511,511 + GFF1841 0.80 -0.3
511,511 + GFF1841 0.80 +0.0
511,511 + GFF1841 0.80 -1.6
511,511 + GFF1841 0.80 +0.0
511,511 + GFF1841 0.80 +0.6
511,512 - GFF1841 0.80 -0.3
511,512 - GFF1841 0.80 -0.7
511,512 - GFF1841 0.80 -0.6
511,512 - GFF1841 0.80 +0.2
511,514 + GFF1841 0.80 +1.1
511,514 + GFF1841 0.80 +0.1
511,514 + GFF1841 0.80 -0.6
511,514 + GFF1841 0.80 -0.6
511,514 + GFF1841 0.80 -0.2
511,514 + GFF1841 0.80 -0.4
511,515 - GFF1841 0.80 -0.4
511,515 - GFF1841 0.80 -0.4
511,515 - GFF1841 0.80 -0.8
511,515 - GFF1841 0.80 +0.4
511,515 - GFF1841 0.80 -1.0
511,739 + GFF1841 0.89 -0.1
511,739 + GFF1841 0.89 +0.1
511,739 + GFF1841 0.89 -0.7
511,739 + GFF1841 0.89 +0.8
511,739 + GFF1841 0.89 -0.4
511,739 + GFF1841 0.89 -0.5
511,739 + GFF1841 0.89 -0.9
511,740 - GFF1841 0.89 -0.0
511,740 - GFF1841 0.89 +2.1
511,740 - GFF1841 0.89 +0.4
511,740 - GFF1841 0.89 +2.0
511,740 - GFF1841 0.89 +0.2
511,740 - GFF1841 0.89 -0.4
512,074 + -1.0
512,074 + -0.6
512,074 + -0.5
512,074 + +0.6
512,074 + -0.3
512,074 + -0.8
512,075 - +0.6
512,075 - -0.7
512,075 - -2.1
512,075 - -1.4
512,075 - -0.6
512,075 - -0.0
512,076 + -0.3
512,076 + -0.7
512,076 + -1.5
512,077 - -3.1
512,220 + GFF1842 0.11 +0.0
512,220 + GFF1842 0.11 +0.9
512,221 - GFF1842 0.11 +2.3
512,221 - GFF1842 0.11 -0.2
512,221 - GFF1842 0.11 -0.0
512,221 - GFF1842 0.11 +0.7
512,221 - GFF1842 0.11 -0.7
512,221 - GFF1842 0.11 -0.2
512,439 + GFF1842 0.33 +0.5
512,439 + GFF1842 0.33 -0.3
512,440 - GFF1842 0.33 -0.1
512,440 - GFF1842 0.33 -1.6
512,440 - GFF1842 0.33 -0.7
512,440 - GFF1842 0.33 +1.0
512,440 - GFF1842 0.33 -0.3
512,440 - GFF1842 0.33 -0.5
512,440 - GFF1842 0.33 -1.0
512,538 + GFF1842 0.43 -0.3
512,538 + GFF1842 0.43 -0.5
512,538 + GFF1842 0.43 -0.8
512,538 + GFF1842 0.43 -0.8
512,539 - GFF1842 0.44 -1.2
512,539 - GFF1842 0.44 -0.2
512,874 + GFF1842 0.78 -0.9
512,874 + GFF1842 0.78 +0.1
512,875 - GFF1842 0.78 -0.3
512,946 + GFF1842 0.85 -0.5
512,946 + GFF1842 0.85 -0.3
512,946 + GFF1842 0.85 -1.3
512,946 + GFF1842 0.85 -0.5
512,946 + GFF1842 0.85 -0.2
512,946 + GFF1842 0.85 +0.2
512,946 + GFF1842 0.85 -0.3
512,946 + GFF1842 0.85 -0.6
512,947 - GFF1842 0.85 -0.7
512,947 - GFF1842 0.85 +0.6
512,947 - GFF1842 0.85 +1.7
512,947 - GFF1842 0.85 -0.5
512,947 - GFF1842 0.85 -1.5
512,947 - GFF1842 0.85 -1.1
512,947 - GFF1842 0.85 -0.8
512,947 - GFF1842 0.85 -0.1
512,947 - GFF1842 0.85 -0.6
512,947 - GFF1842 0.85 +1.4
512,947 - GFF1842 0.85 -0.7
512,947 - GFF1842 0.85 -0.9
512,947 - GFF1842 0.85 -0.5
512,947 - GFF1842 0.85 +0.1
512,949 + GFF1842 0.85 -0.3
512,949 + GFF1842 0.85 -0.1
512,949 + GFF1842 0.85 -1.4
512,949 + GFF1842 0.85 -0.8
512,949 + GFF1842 0.85 +0.7
512,949 + GFF1842 0.85 -0.1
512,950 - GFF1842 0.85 -0.4
512,950 - GFF1842 0.85 +0.7
512,950 - GFF1842 0.85 -0.6
512,950 - GFF1842 0.85 -0.3
512,950 - GFF1842 0.85 +0.2
513,365 + -1.4
513,365 + -1.2
513,365 + -2.4
513,365 + +0.7
513,365 + -0.0
513,365 + +0.2
513,365 + -0.2
513,365 + -0.5
513,365 + +0.1
513,365 + -0.3
513,365 + +0.4
513,365 + -0.2
513,365 + +1.7
513,365 + +1.2
513,365 + +0.1
513,366 - -0.1
513,366 - +1.0
513,366 - +0.7
513,366 - +0.3
513,366 - -0.5
513,366 - -0.4
513,366 - -0.2
513,366 - -0.3
513,366 - -0.8
513,476 + GFF1843 0.15 +0.1
513,476 + GFF1843 0.15 +0.3
513,486 - GFF1843 0.15 -0.4
513,486 - GFF1843 0.15 -0.1
513,525 - GFF1843 0.19 +2.3
513,533 + GFF1843 0.19 -0.5
513,534 - GFF1843 0.19 -1.3
513,534 - GFF1843 0.19 -0.8
513,557 + GFF1843 0.21 +1.3
513,557 + GFF1843 0.21 -0.1
513,557 + GFF1843 0.21 +0.0
513,558 - GFF1843 0.21 -0.8
513,558 - GFF1843 0.21 +0.1
513,645 + GFF1843 0.28 -0.2
513,654 + GFF1843 0.29 -0.3
513,654 + GFF1843 0.29 +0.1

Or see this region's nucleotide sequence