Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1553 and GFF1554 are separated by 123 nucleotides GFF1554 and GFF1555 are separated by 377 nucleotides GFF1555 and GFF1556 are separated by 99 nucleotides
GFF1553 - no description, at 152,173 to 152,718
GFF1553
GFF1554 - no description, at 152,842 to 153,189
GFF1554
GFF1555 - Transcriptional regulator, LysR family, at 153,567 to 154,460
GFF1555
GFF1556 - Tricarboxylate transport protein TctC, at 154,560 to 155,540
GFF1556
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.672 kb on - strand at 152.679 kb on + strand at 152.689 kb on - strand at 152.697 kb on + strand at 152.697 kb on + strand at 152.698 kb on - strand at 152.698 kb on - strand at 152.733 kb on + strand at 152.734 kb on - strand at 152.734 kb on - strand at 153.032 kb on + strand, within GFF1554 at 153.383 kb on + strand at 153.384 kb on - strand at 153.404 kb on - strand at 153.411 kb on + strand at 153.411 kb on + strand at 153.411 kb on + strand at 153.412 kb on - strand at 153.412 kb on - strand at 153.899 kb on - strand, within GFF1555 at 153.964 kb on + strand, within GFF1555 at 153.964 kb on + strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.965 kb on - strand, within GFF1555 at 153.980 kb on + strand, within GFF1555 at 153.981 kb on - strand, within GFF1555 at 153.981 kb on - strand, within GFF1555 at 154.158 kb on + strand, within GFF1555 at 154.158 kb on + strand, within GFF1555 at 154.159 kb on - strand, within GFF1555 at 154.189 kb on + strand, within GFF1555 at 154.190 kb on - strand, within GFF1555 at 154.267 kb on - strand, within GFF1555 at 154.272 kb on + strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.273 kb on - strand, within GFF1555 at 154.396 kb on - strand at 154.563 kb on + strand at 154.563 kb on + strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.564 kb on - strand at 154.650 kb on + strand at 154.650 kb on + strand at 154.834 kb on - strand, within GFF1556 at 154.899 kb on + strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.029 kb on - strand, within GFF1556 at 155.034 kb on + strand, within GFF1556 at 155.035 kb on - strand, within GFF1556 at 155.035 kb on - strand, within GFF1556 at 155.205 kb on + strand, within GFF1556
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 152,672 - +1.1 152,679 + -1.3 152,689 - -0.7 152,697 + -0.2 152,697 + -0.9 152,698 - +0.3 152,698 - +1.9 152,733 + -0.3 152,734 - +0.3 152,734 - -0.5 153,032 + GFF1554 0.55 -1.2 153,383 + -1.5 153,384 - -1.3 153,404 - +0.1 153,411 + +0.5 153,411 + -0.7 153,411 + -0.5 153,412 - +0.1 153,412 - -1.5 153,899 - GFF1555 0.37 +0.1 153,964 + GFF1555 0.44 -0.1 153,964 + GFF1555 0.44 +0.6 153,965 - GFF1555 0.45 -0.3 153,965 - GFF1555 0.45 +0.0 153,965 - GFF1555 0.45 -0.3 153,965 - GFF1555 0.45 -1.6 153,980 + GFF1555 0.46 -0.6 153,981 - GFF1555 0.46 -1.1 153,981 - GFF1555 0.46 +0.0 154,158 + GFF1555 0.66 -0.4 154,158 + GFF1555 0.66 -1.7 154,159 - GFF1555 0.66 -0.7 154,189 + GFF1555 0.70 -0.3 154,190 - GFF1555 0.70 -0.6 154,267 - GFF1555 0.78 -0.4 154,272 + GFF1555 0.79 -1.2 154,273 - GFF1555 0.79 -0.8 154,273 - GFF1555 0.79 -1.9 154,273 - GFF1555 0.79 -1.1 154,396 - +0.3 154,563 + -0.4 154,563 + -0.5 154,564 - -1.3 154,564 - +0.1 154,564 - -1.3 154,564 - -1.3 154,650 + -0.9 154,650 + -0.3 154,834 - GFF1556 0.28 -0.1 154,899 + GFF1556 0.35 -0.2 155,029 - GFF1556 0.48 -0.7 155,029 - GFF1556 0.48 +0.8 155,029 - GFF1556 0.48 -0.2 155,029 - GFF1556 0.48 +0.7 155,034 + GFF1556 0.48 -0.5 155,035 - GFF1556 0.48 +0.4 155,035 - GFF1556 0.48 +0.6 155,205 + GFF1556 0.66 +1.7
Or see this region's nucleotide sequence