Strain Fitness in Variovorax sp. SCN45 around GFF1505

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1504 and GFF1505 overlap by 8 nucleotidesGFF1505 and GFF1506 are separated by 10 nucleotides GFF1504 - Alkylhydroperoxidase AhpD domain protein, at 95,282 to 96,454 GFF1504 GFF1505 - Cytosolic acyl coenzyme A thioester hydrolase, inducible (EC 3.1.2.2), at 96,447 to 97,766 GFF1505 GFF1506 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 97,777 to 99,342 GFF1506 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 95.584 kb on - strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.658 kb on + strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.659 kb on - strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.724 kb on + strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.725 kb on - strand, within GFF1504at 95.727 kb on + strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.728 kb on - strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.844 kb on + strand, within GFF1504at 95.845 kb on - strand, within GFF1504at 96.333 kb on + strand, within GFF1504at 96.333 kb on + strand, within GFF1504at 96.334 kb on - strand, within GFF1504at 96.602 kb on - strand, within GFF1505at 96.602 kb on - strand, within GFF1505at 96.626 kb on - strand, within GFF1505at 96.724 kb on + strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.725 kb on - strand, within GFF1505at 96.946 kb on - strand, within GFF1505at 97.021 kb on + strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.022 kb on - strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.189 kb on + strand, within GFF1505at 97.190 kb on - strand, within GFF1505at 97.216 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.252 kb on + strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.253 kb on - strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.339 kb on + strand, within GFF1505at 97.340 kb on - strand, within GFF1505at 97.561 kb on + strand, within GFF1505at 97.809 kb on + strandat 97.869 kb on - strandat 97.874 kb on + strandat 97.875 kb on - strandat 97.875 kb on - strandat 98.000 kb on + strand, within GFF1506at 98.000 kb on + strand, within GFF1506at 98.069 kb on + strand, within GFF1506at 98.117 kb on + strand, within GFF1506at 98.118 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.325 kb on - strand, within GFF1506at 98.351 kb on + strand, within GFF1506at 98.352 kb on - strand, within GFF1506at 98.352 kb on - strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.579 kb on + strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.580 kb on - strand, within GFF1506at 98.702 kb on + strand, within GFF1506at 98.735 kb on + strand, within GFF1506at 98.736 kb on - strand, within GFF1506

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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95,584 - GFF1504 0.26 -1.2
95,658 + GFF1504 0.32 -0.8
95,658 + GFF1504 0.32 -0.0
95,658 + GFF1504 0.32 -0.1
95,658 + GFF1504 0.32 -0.3
95,658 + GFF1504 0.32 -0.6
95,659 - GFF1504 0.32 -1.0
95,659 - GFF1504 0.32 -0.1
95,659 - GFF1504 0.32 -0.1
95,659 - GFF1504 0.32 -0.9
95,659 - GFF1504 0.32 +0.7
95,659 - GFF1504 0.32 +0.3
95,659 - GFF1504 0.32 +0.5
95,724 + GFF1504 0.38 +0.2
95,724 + GFF1504 0.38 -1.7
95,724 + GFF1504 0.38 -0.8
95,724 + GFF1504 0.38 -1.8
95,724 + GFF1504 0.38 +1.2
95,725 - GFF1504 0.38 +0.0
95,725 - GFF1504 0.38 +0.7
95,725 - GFF1504 0.38 -0.4
95,725 - GFF1504 0.38 -1.0
95,725 - GFF1504 0.38 +0.9
95,727 + GFF1504 0.38 -1.0
95,728 - GFF1504 0.38 -0.9
95,728 - GFF1504 0.38 -1.3
95,728 - GFF1504 0.38 +1.2
95,728 - GFF1504 0.38 -0.0
95,728 - GFF1504 0.38 -0.1
95,844 + GFF1504 0.48 -0.9
95,844 + GFF1504 0.48 -0.1
95,844 + GFF1504 0.48 -0.1
95,845 - GFF1504 0.48 +0.3
96,333 + GFF1504 0.90 -0.9
96,333 + GFF1504 0.90 -0.3
96,334 - GFF1504 0.90 -0.8
96,602 - GFF1505 0.12 +0.2
96,602 - GFF1505 0.12 -1.3
96,626 - GFF1505 0.14 +0.3
96,724 + GFF1505 0.21 +0.3
96,725 - GFF1505 0.21 -0.2
96,725 - GFF1505 0.21 -0.3
96,725 - GFF1505 0.21 +0.1
96,725 - GFF1505 0.21 -0.1
96,946 - GFF1505 0.38 +0.8
97,021 + GFF1505 0.43 -0.0
97,022 - GFF1505 0.44 -1.7
97,022 - GFF1505 0.44 -0.9
97,022 - GFF1505 0.44 -0.8
97,189 + GFF1505 0.56 -2.3
97,189 + GFF1505 0.56 -0.1
97,190 - GFF1505 0.56 -0.3
97,216 + GFF1505 0.58 -0.2
97,252 + GFF1505 0.61 +0.3
97,252 + GFF1505 0.61 -0.1
97,252 + GFF1505 0.61 -0.3
97,252 + GFF1505 0.61 +1.3
97,253 - GFF1505 0.61 +0.0
97,253 - GFF1505 0.61 +0.5
97,253 - GFF1505 0.61 -0.2
97,339 + GFF1505 0.68 +0.4
97,339 + GFF1505 0.68 +0.2
97,339 + GFF1505 0.68 -0.4
97,339 + GFF1505 0.68 +1.1
97,340 - GFF1505 0.68 -0.9
97,561 + GFF1505 0.84 +0.7
97,809 + +0.3
97,869 - +0.4
97,874 + -0.6
97,875 - +0.7
97,875 - -1.9
98,000 + GFF1506 0.14 -0.8
98,000 + GFF1506 0.14 -0.6
98,069 + GFF1506 0.19 +1.1
98,117 + GFF1506 0.22 -0.1
98,118 - GFF1506 0.22 -0.7
98,325 - GFF1506 0.35 -1.9
98,325 - GFF1506 0.35 -0.2
98,325 - GFF1506 0.35 -0.5
98,351 + GFF1506 0.37 -0.3
98,352 - GFF1506 0.37 -0.5
98,352 - GFF1506 0.37 -0.9
98,579 + GFF1506 0.51 -0.6
98,579 + GFF1506 0.51 -0.3
98,579 + GFF1506 0.51 +0.3
98,580 - GFF1506 0.51 +0.1
98,580 - GFF1506 0.51 -1.9
98,580 - GFF1506 0.51 -0.7
98,702 + GFF1506 0.59 -0.5
98,735 + GFF1506 0.61 -0.2
98,736 - GFF1506 0.61 +0.3

Or see this region's nucleotide sequence