Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1236 and GFF1237 are separated by 7 nucleotides GFF1237 and GFF1238 are separated by 98 nucleotides GFF1238 and GFF1239 overlap by 1 nucleotides
GFF1236 - Methionine sulfoxide reductase molybdopterin-binding subunit, at 555,047 to 555,838
GFF1236
GFF1237 - Methionine sulfoxide reductase cytochrome b subunit, at 555,846 to 556,502
GFF1237
GFF1238 - Two-component transcriptional response regulator, OmpR family, at 556,601 to 557,326
GFF1238
GFF1239 - Two-component system sensor histidine kinase, at 557,326 to 558,822
GFF1239
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1 at 556.079 kb on - strand, within GFF1237 at 556.079 kb on - strand, within GFF1237 at 556.102 kb on + strand, within GFF1237 at 556.103 kb on - strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.229 kb on - strand, within GFF1237 at 556.351 kb on + strand, within GFF1237 at 556.555 kb on + strand at 556.555 kb on + strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.685 kb on + strand, within GFF1238 at 556.685 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.904 kb on + strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 556.905 kb on - strand, within GFF1238 at 557.105 kb on + strand, within GFF1238 at 557.105 kb on + strand, within GFF1238 at 557.106 kb on - strand, within GFF1238 at 557.172 kb on - strand, within GFF1238 at 557.186 kb on + strand, within GFF1238 at 557.285 kb on + strand at 557.285 kb on + strand at 557.286 kb on - strand at 557.286 kb on - strand at 557.581 kb on + strand, within GFF1239 at 557.581 kb on + strand, within GFF1239 at 557.581 kb on + strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.582 kb on - strand, within GFF1239 at 557.782 kb on + strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.783 kb on - strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.788 kb on + strand, within GFF1239 at 557.789 kb on - strand, within GFF1239 at 557.789 kb on - strand, within GFF1239 at 558.190 kb on + strand, within GFF1239 at 558.247 kb on + strand, within GFF1239 at 558.326 kb on - strand, within GFF1239
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 556,079 - GFF1237 0.35 -0.9 556,079 - GFF1237 0.35 -0.9 556,102 + GFF1237 0.39 +0.6 556,103 - GFF1237 0.39 -0.2 556,228 + GFF1237 0.58 +0.8 556,228 + GFF1237 0.58 -1.3 556,228 + GFF1237 0.58 -0.6 556,228 + GFF1237 0.58 -2.6 556,228 + GFF1237 0.58 +0.8 556,228 + GFF1237 0.58 +0.2 556,229 - GFF1237 0.58 -0.2 556,351 + GFF1237 0.77 +0.8 556,555 + +0.1 556,555 + +1.6 556,556 - +0.6 556,556 - -1.2 556,556 - +0.0 556,685 + GFF1238 0.12 -0.6 556,685 + GFF1238 0.12 -1.6 556,826 + GFF1238 0.31 -0.6 556,826 + GFF1238 0.31 +0.5 556,826 + GFF1238 0.31 +0.4 556,827 - GFF1238 0.31 +0.0 556,827 - GFF1238 0.31 -0.9 556,827 - GFF1238 0.31 -0.0 556,904 + GFF1238 0.42 +0.1 556,904 + GFF1238 0.42 -0.2 556,904 + GFF1238 0.42 -1.5 556,905 - GFF1238 0.42 -0.0 556,905 - GFF1238 0.42 -1.4 556,905 - GFF1238 0.42 -0.6 557,105 + GFF1238 0.69 -0.2 557,105 + GFF1238 0.69 -0.4 557,106 - GFF1238 0.70 -1.0 557,172 - GFF1238 0.79 +1.4 557,186 + GFF1238 0.81 +0.4 557,285 + -0.6 557,285 + +1.4 557,286 - -1.0 557,286 - +1.1 557,581 + GFF1239 0.17 -0.7 557,581 + GFF1239 0.17 -0.5 557,581 + GFF1239 0.17 -0.6 557,582 - GFF1239 0.17 -0.2 557,582 - GFF1239 0.17 -0.9 557,582 - GFF1239 0.17 +0.0 557,582 - GFF1239 0.17 +0.4 557,582 - GFF1239 0.17 -1.0 557,782 + GFF1239 0.30 +0.8 557,783 - GFF1239 0.31 -0.2 557,783 - GFF1239 0.31 +0.2 557,783 - GFF1239 0.31 +0.2 557,783 - GFF1239 0.31 +1.1 557,783 - GFF1239 0.31 -1.2 557,788 + GFF1239 0.31 -0.4 557,788 + GFF1239 0.31 +0.0 557,788 + GFF1239 0.31 -0.6 557,788 + GFF1239 0.31 +0.4 557,788 + GFF1239 0.31 -1.2 557,788 + GFF1239 0.31 -0.1 557,788 + GFF1239 0.31 +0.1 557,788 + GFF1239 0.31 +0.0 557,788 + GFF1239 0.31 -0.7 557,789 - GFF1239 0.31 -0.2 557,789 - GFF1239 0.31 -2.0 558,190 + GFF1239 0.58 +0.8 558,247 + GFF1239 0.62 +0.4 558,326 - GFF1239 0.67 -0.3
Or see this region's nucleotide sequence