Strain Fitness in Variovorax sp. SCN45 around GFF1139

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1137 and GFF1138 are separated by 129 nucleotidesGFF1138 and GFF1139 overlap by 4 nucleotidesGFF1139 and GFF1140 overlap by 1 nucleotides GFF1137 - FIG00348850: hypothetical protein, at 452,656 to 453,498 GFF1137 GFF1138 - Transcriptional regulator, AcrR family, at 453,628 to 454,257 GFF1138 GFF1139 - Domain of unknown function / Efflux ABC transporter, permease protein, at 454,254 to 455,408 GFF1139 GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592 GFF1140 Position (kb) 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 453.305 kb on + strand, within GFF1137at 453.503 kb on + strandat 453.518 kb on + strandat 453.518 kb on + strandat 453.546 kb on + strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.600 kb on + strandat 453.611 kb on - strandat 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.740 kb on - strand, within GFF1138at 453.740 kb on - strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.841 kb on + strand, within GFF1138at 453.841 kb on + strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.937 kb on + strand, within GFF1138at 453.937 kb on + strand, within GFF1138at 453.938 kb on - strand, within GFF1138at 453.938 kb on - strand, within GFF1138at 453.946 kb on + strand, within GFF1138at 453.946 kb on + strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 454.055 kb on - strand, within GFF1138at 454.256 kb on - strandat 454.274 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.591 kb on + strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.592 kb on - strand, within GFF1139at 454.639 kb on + strand, within GFF1139at 454.640 kb on - strand, within GFF1139at 454.669 kb on + strand, within GFF1139at 454.669 kb on + strand, within GFF1139at 454.670 kb on - strand, within GFF1139at 454.670 kb on - strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.837 kb on + strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.838 kb on - strand, within GFF1139at 454.994 kb on - strand, within GFF1139at 454.994 kb on - strand, within GFF1139at 455.020 kb on + strand, within GFF1139at 455.020 kb on + strand, within GFF1139at 455.021 kb on - strand, within GFF1139at 455.102 kb on - strand, within GFF1139at 455.275 kb on + strand, within GFF1139at 455.288 kb on - strand, within GFF1139at 455.288 kb on - strand, within GFF1139at 455.299 kb on + strandat 455.299 kb on + strandat 455.299 kb on + strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.300 kb on - strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.520 kb on + strandat 455.521 kb on - strandat 455.521 kb on - strandat 455.521 kb on - strandat 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.568 kb on + strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.569 kb on - strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.577 kb on + strand, within GFF1140at 455.578 kb on - strand, within GFF1140at 455.578 kb on - strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.036 kb on + strand, within GFF1140at 456.037 kb on - strand, within GFF1140at 456.092 kb on + strand, within GFF1140at 456.092 kb on + strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.093 kb on - strand, within GFF1140at 456.345 kb on + strand, within GFF1140at 456.345 kb on + strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140at 456.346 kb on - strand, within GFF1140

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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453,305 + GFF1137 0.77 +0.6
453,503 + -0.0
453,518 + -0.5
453,518 + -0.0
453,546 + -0.9
453,547 - +1.4
453,547 - -0.4
453,547 - -0.7
453,547 - +0.5
453,547 - -0.2
453,547 - -0.0
453,600 + -0.1
453,611 - +0.4
453,691 + GFF1138 0.10 -1.1
453,691 + GFF1138 0.10 -0.3
453,691 + GFF1138 0.10 -0.2
453,691 + GFF1138 0.10 -1.2
453,691 + GFF1138 0.10 -1.3
453,691 + GFF1138 0.10 +0.2
453,691 + GFF1138 0.10 +2.0
453,691 + GFF1138 0.10 -0.7
453,691 + GFF1138 0.10 +0.1
453,691 + GFF1138 0.10 -0.8
453,691 + GFF1138 0.10 +1.0
453,691 + GFF1138 0.10 +0.7
453,691 + GFF1138 0.10 +1.0
453,692 - GFF1138 0.10 -0.3
453,692 - GFF1138 0.10 -1.1
453,692 - GFF1138 0.10 -0.1
453,692 - GFF1138 0.10 -0.4
453,692 - GFF1138 0.10 -0.2
453,692 - GFF1138 0.10 -0.9
453,692 - GFF1138 0.10 -0.8
453,692 - GFF1138 0.10 -0.8
453,692 - GFF1138 0.10 +0.7
453,692 - GFF1138 0.10 -0.9
453,692 - GFF1138 0.10 -0.0
453,692 - GFF1138 0.10 -0.4
453,692 - GFF1138 0.10 -0.9
453,692 - GFF1138 0.10 -1.5
453,692 - GFF1138 0.10 -1.2
453,692 - GFF1138 0.10 +0.5
453,692 - GFF1138 0.10 -0.6
453,692 - GFF1138 0.10 +1.6
453,692 - GFF1138 0.10 -1.4
453,692 - GFF1138 0.10 -0.3
453,692 - GFF1138 0.10 -0.1
453,740 - GFF1138 0.18 -1.1
453,740 - GFF1138 0.18 -0.8
453,792 + GFF1138 0.26 +2.1
453,792 + GFF1138 0.26 +0.3
453,792 + GFF1138 0.26 -0.9
453,799 + GFF1138 0.27 -0.9
453,799 + GFF1138 0.27 -0.5
453,799 + GFF1138 0.27 -2.1
453,799 + GFF1138 0.27 -1.6
453,799 + GFF1138 0.27 -1.0
453,799 + GFF1138 0.27 +0.3
453,799 + GFF1138 0.27 +0.5
453,799 + GFF1138 0.27 -1.1
453,799 + GFF1138 0.27 -0.5
453,799 + GFF1138 0.27 -0.8
453,799 + GFF1138 0.27 -0.5
453,799 + GFF1138 0.27 +0.1
453,799 + GFF1138 0.27 -0.3
453,799 + GFF1138 0.27 -0.9
453,800 - GFF1138 0.27 -0.4
453,800 - GFF1138 0.27 -0.0
453,800 - GFF1138 0.27 +0.5
453,800 - GFF1138 0.27 -1.0
453,800 - GFF1138 0.27 -0.7
453,800 - GFF1138 0.27 -1.6
453,800 - GFF1138 0.27 -1.4
453,800 - GFF1138 0.27 -0.2
453,800 - GFF1138 0.27 -0.8
453,800 - GFF1138 0.27 -1.1
453,800 - GFF1138 0.27 +1.4
453,800 - GFF1138 0.27 -0.2
453,800 - GFF1138 0.27 -1.2
453,800 - GFF1138 0.27 -0.7
453,800 - GFF1138 0.27 +0.4
453,841 + GFF1138 0.34 -0.9
453,841 + GFF1138 0.34 -0.4
453,842 - GFF1138 0.34 -0.5
453,842 - GFF1138 0.34 -0.7
453,842 - GFF1138 0.34 +0.3
453,937 + GFF1138 0.49 -0.9
453,937 + GFF1138 0.49 -0.1
453,938 - GFF1138 0.49 -0.5
453,938 - GFF1138 0.49 +1.0
453,946 + GFF1138 0.50 -0.4
453,946 + GFF1138 0.50 +0.0
453,947 - GFF1138 0.51 -1.1
453,947 - GFF1138 0.51 -0.3
453,947 - GFF1138 0.51 -0.4
454,055 - GFF1138 0.68 +1.4
454,256 - -1.0
454,274 + -2.1
454,348 + +0.0
454,348 + -0.2
454,348 + -1.0
454,348 + +0.4
454,348 + -0.1
454,348 + -0.2
454,348 + -0.4
454,348 + +0.4
454,349 - -1.4
454,349 - -0.2
454,349 - -0.0
454,349 - -0.1
454,349 - -1.4
454,349 - +1.0
454,349 - -0.8
454,349 - +0.7
454,349 - +0.3
454,591 + GFF1139 0.29 -0.1
454,591 + GFF1139 0.29 +0.1
454,591 + GFF1139 0.29 +0.4
454,591 + GFF1139 0.29 -0.1
454,591 + GFF1139 0.29 -0.7
454,591 + GFF1139 0.29 +0.1
454,592 - GFF1139 0.29 -0.5
454,592 - GFF1139 0.29 +0.3
454,592 - GFF1139 0.29 -1.4
454,592 - GFF1139 0.29 -2.6
454,592 - GFF1139 0.29 +0.1
454,592 - GFF1139 0.29 -0.8
454,592 - GFF1139 0.29 +1.4
454,592 - GFF1139 0.29 -0.3
454,639 + GFF1139 0.33 +2.0
454,640 - GFF1139 0.33 +0.2
454,669 + GFF1139 0.36 +0.2
454,669 + GFF1139 0.36 -0.3
454,670 - GFF1139 0.36 +0.8
454,670 - GFF1139 0.36 +0.1
454,837 + GFF1139 0.50 +0.5
454,837 + GFF1139 0.50 -0.2
454,837 + GFF1139 0.50 -1.6
454,837 + GFF1139 0.50 -0.5
454,837 + GFF1139 0.50 -0.4
454,837 + GFF1139 0.50 -1.2
454,837 + GFF1139 0.50 -1.2
454,837 + GFF1139 0.50 -0.6
454,837 + GFF1139 0.50 +0.2
454,837 + GFF1139 0.50 +0.2
454,837 + GFF1139 0.50 +0.3
454,837 + GFF1139 0.50 +0.2
454,837 + GFF1139 0.50 +0.4
454,838 - GFF1139 0.51 -0.4
454,838 - GFF1139 0.51 +0.2
454,838 - GFF1139 0.51 +0.5
454,838 - GFF1139 0.51 -0.5
454,838 - GFF1139 0.51 -0.5
454,838 - GFF1139 0.51 +0.7
454,838 - GFF1139 0.51 -0.3
454,838 - GFF1139 0.51 +0.4
454,838 - GFF1139 0.51 -1.1
454,838 - GFF1139 0.51 +0.1
454,838 - GFF1139 0.51 +0.1
454,838 - GFF1139 0.51 +1.8
454,994 - GFF1139 0.64 +0.1
454,994 - GFF1139 0.64 +0.3
455,020 + GFF1139 0.66 +0.1
455,020 + GFF1139 0.66 +0.3
455,021 - GFF1139 0.66 +1.4
455,102 - GFF1139 0.73 -0.3
455,275 + GFF1139 0.88 -3.7
455,288 - GFF1139 0.90 -0.4
455,288 - GFF1139 0.90 -0.9
455,299 + -1.6
455,299 + -0.2
455,299 + -0.4
455,300 - -0.6
455,300 - -0.2
455,300 - -1.3
455,300 - -0.7
455,300 - -0.7
455,300 - -0.9
455,300 - -0.6
455,300 - +0.6
455,520 + -1.2
455,520 + -0.4
455,520 + +0.5
455,520 + -2.1
455,520 + +0.8
455,521 - +1.8
455,521 - +0.8
455,521 - -0.3
455,568 + GFF1140 0.14 -0.2
455,568 + GFF1140 0.14 -0.7
455,568 + GFF1140 0.14 -0.8
455,568 + GFF1140 0.14 -0.7
455,568 + GFF1140 0.14 +0.8
455,568 + GFF1140 0.14 -1.0
455,568 + GFF1140 0.14 +0.2
455,568 + GFF1140 0.14 +0.1
455,568 + GFF1140 0.14 -0.2
455,568 + GFF1140 0.14 -0.1
455,568 + GFF1140 0.14 -1.8
455,568 + GFF1140 0.14 -0.8
455,569 - GFF1140 0.14 -1.8
455,569 - GFF1140 0.14 -0.8
455,569 - GFF1140 0.14 -0.4
455,569 - GFF1140 0.14 -0.2
455,569 - GFF1140 0.14 -0.9
455,569 - GFF1140 0.14 +1.2
455,569 - GFF1140 0.14 -0.3
455,569 - GFF1140 0.14 +0.3
455,577 + GFF1140 0.14 +0.8
455,577 + GFF1140 0.14 -0.0
455,577 + GFF1140 0.14 -0.8
455,577 + GFF1140 0.14 -0.2
455,578 - GFF1140 0.14 +0.4
455,578 - GFF1140 0.14 +3.4
456,036 + GFF1140 0.53 +0.3
456,036 + GFF1140 0.53 -0.4
456,036 + GFF1140 0.53 -0.7
456,036 + GFF1140 0.53 -0.4
456,037 - GFF1140 0.53 -0.5
456,092 + GFF1140 0.58 +0.4
456,092 + GFF1140 0.58 -0.3
456,093 - GFF1140 0.58 -0.1
456,093 - GFF1140 0.58 +1.4
456,093 - GFF1140 0.58 +0.8
456,093 - GFF1140 0.58 +0.2
456,345 + GFF1140 0.79 -0.4
456,345 + GFF1140 0.79 -0.1
456,346 - GFF1140 0.79 +0.1
456,346 - GFF1140 0.79 +0.4
456,346 - GFF1140 0.79 +0.7
456,346 - GFF1140 0.79 +0.1

Or see this region's nucleotide sequence