Strain Fitness in Variovorax sp. SCN45 around GFF1029

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1027 and GFF1028 are separated by 15 nucleotidesGFF1028 and GFF1029 are separated by 117 nucleotidesGFF1029 and GFF1030 are separated by 146 nucleotides GFF1027 - Ribonuclease BN, at 342,255 to 343,178 GFF1027 GFF1028 - FIG027190: Putative transmembrane protein, at 343,194 to 343,754 GFF1028 GFF1029 - CHRD domain containing protein, at 343,872 to 344,321 GFF1029 GFF1030 - Ferredoxin reductase, at 344,468 to 345,598 GFF1030 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1 2at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.960 kb on + strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.961 kb on - strand, within GFF1027at 342.991 kb on - strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.032 kb on + strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.033 kb on - strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.035 kb on + strand, within GFF1027at 343.036 kb on - strand, within GFF1027at 343.036 kb on - strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.080 kb on + strand, within GFF1027at 343.081 kb on - strand, within GFF1027at 343.081 kb on - strand, within GFF1027at 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.092 kb on + strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.093 kb on - strandat 343.405 kb on + strand, within GFF1028at 343.405 kb on + strand, within GFF1028at 343.405 kb on + strand, within GFF1028at 343.406 kb on - strand, within GFF1028at 343.406 kb on - strand, within GFF1028at 343.406 kb on - strand, within GFF1028at 343.406 kb on - strand, within GFF1028at 343.406 kb on - strand, within GFF1028at 343.833 kb on + strandat 343.833 kb on + strandat 343.833 kb on + strandat 343.833 kb on + strandat 343.834 kb on - strandat 343.834 kb on - strandat 343.834 kb on - strandat 343.864 kb on + strandat 343.864 kb on + strandat 343.864 kb on + strandat 343.865 kb on - strandat 343.865 kb on - strandat 343.865 kb on - strandat 343.865 kb on - strandat 343.865 kb on - strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.881 kb on + strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 343.882 kb on - strandat 344.076 kb on + strand, within GFF1029at 344.076 kb on + strand, within GFF1029at 344.076 kb on + strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.077 kb on - strand, within GFF1029at 344.088 kb on + strand, within GFF1029at 344.088 kb on + strand, within GFF1029at 344.088 kb on + strand, within GFF1029at 344.088 kb on + strand, within GFF1029at 344.088 kb on + strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.089 kb on - strand, within GFF1029at 344.253 kb on + strand, within GFF1029at 344.253 kb on + strand, within GFF1029at 344.253 kb on + strand, within GFF1029at 344.254 kb on - strand, within GFF1029at 344.254 kb on - strand, within GFF1029at 344.522 kb on + strandat 344.522 kb on + strandat 344.522 kb on + strandat 344.789 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.834 kb on + strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.835 kb on - strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.837 kb on + strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.838 kb on - strand, within GFF1030at 344.954 kb on + strand, within GFF1030at 344.954 kb on + strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 344.955 kb on - strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.053 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.092 kb on + strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.093 kb on - strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.215 kb on + strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030at 345.216 kb on - strand, within GFF1030

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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342,960 + GFF1027 0.76 -1.6
342,960 + GFF1027 0.76 -0.4
342,960 + GFF1027 0.76 -0.5
342,960 + GFF1027 0.76 -0.2
342,960 + GFF1027 0.76 +0.0
342,960 + GFF1027 0.76 -0.3
342,960 + GFF1027 0.76 +1.7
342,961 - GFF1027 0.76 -1.1
342,961 - GFF1027 0.76 -0.9
342,961 - GFF1027 0.76 -1.0
342,961 - GFF1027 0.76 -0.7
342,961 - GFF1027 0.76 +1.4
342,991 - GFF1027 0.80 +1.4
343,032 + GFF1027 0.84 +0.1
343,032 + GFF1027 0.84 -0.7
343,032 + GFF1027 0.84 +0.0
343,032 + GFF1027 0.84 +0.4
343,032 + GFF1027 0.84 -0.5
343,032 + GFF1027 0.84 -1.6
343,032 + GFF1027 0.84 +0.7
343,032 + GFF1027 0.84 -1.2
343,033 - GFF1027 0.84 +0.7
343,033 - GFF1027 0.84 +0.8
343,033 - GFF1027 0.84 +0.6
343,033 - GFF1027 0.84 +1.1
343,033 - GFF1027 0.84 +0.3
343,033 - GFF1027 0.84 -0.4
343,033 - GFF1027 0.84 +0.8
343,033 - GFF1027 0.84 +0.0
343,033 - GFF1027 0.84 +0.2
343,033 - GFF1027 0.84 -0.1
343,033 - GFF1027 0.84 -0.4
343,033 - GFF1027 0.84 +0.4
343,033 - GFF1027 0.84 -1.7
343,035 + GFF1027 0.84 -0.5
343,035 + GFF1027 0.84 -0.9
343,035 + GFF1027 0.84 +0.4
343,035 + GFF1027 0.84 +0.8
343,035 + GFF1027 0.84 +0.1
343,036 - GFF1027 0.85 -0.6
343,036 - GFF1027 0.85 +0.2
343,080 + GFF1027 0.89 +1.4
343,080 + GFF1027 0.89 +0.5
343,080 + GFF1027 0.89 -0.3
343,080 + GFF1027 0.89 -0.8
343,080 + GFF1027 0.89 -1.4
343,080 + GFF1027 0.89 +0.5
343,081 - GFF1027 0.89 -0.6
343,081 - GFF1027 0.89 +0.3
343,092 + -1.5
343,092 + -0.1
343,092 + -0.2
343,092 + +0.8
343,092 + -0.6
343,092 + -0.1
343,093 - -0.1
343,093 - -0.6
343,093 - +0.5
343,093 - +0.1
343,093 - -0.6
343,093 - -1.0
343,093 - +0.6
343,093 - -0.4
343,093 - -0.6
343,093 - -0.0
343,093 - +0.4
343,093 - -1.1
343,405 + GFF1028 0.38 +0.6
343,405 + GFF1028 0.38 +0.4
343,405 + GFF1028 0.38 -2.3
343,406 - GFF1028 0.38 -0.3
343,406 - GFF1028 0.38 -2.0
343,406 - GFF1028 0.38 -0.2
343,406 - GFF1028 0.38 -2.0
343,406 - GFF1028 0.38 +0.1
343,833 + +0.2
343,833 + -0.2
343,833 + +0.2
343,833 + +0.2
343,834 - +1.2
343,834 - -0.9
343,834 - +0.0
343,864 + +1.4
343,864 + +0.7
343,864 + +1.1
343,865 - -1.4
343,865 - -0.7
343,865 - +0.0
343,865 - +0.4
343,865 - +1.3
343,881 + -0.5
343,881 + -0.1
343,881 + -0.7
343,881 + -0.2
343,881 + -0.0
343,881 + -2.2
343,881 + -0.4
343,881 + +0.0
343,882 - -0.2
343,882 - -0.6
343,882 - -0.7
343,882 - +0.7
343,882 - -0.0
343,882 - +0.2
343,882 - -1.2
343,882 - -0.2
343,882 - -0.1
343,882 - -1.5
343,882 - +0.1
344,076 + GFF1029 0.45 +0.9
344,076 + GFF1029 0.45 -0.1
344,076 + GFF1029 0.45 +0.8
344,077 - GFF1029 0.46 -2.0
344,077 - GFF1029 0.46 -1.3
344,077 - GFF1029 0.46 +0.5
344,077 - GFF1029 0.46 +0.4
344,077 - GFF1029 0.46 +0.3
344,077 - GFF1029 0.46 -0.2
344,077 - GFF1029 0.46 -0.5
344,077 - GFF1029 0.46 +0.4
344,077 - GFF1029 0.46 +0.0
344,077 - GFF1029 0.46 +0.2
344,088 + GFF1029 0.48 +0.6
344,088 + GFF1029 0.48 +0.2
344,088 + GFF1029 0.48 +0.4
344,088 + GFF1029 0.48 +0.4
344,088 + GFF1029 0.48 -0.3
344,089 - GFF1029 0.48 +0.5
344,089 - GFF1029 0.48 -1.2
344,089 - GFF1029 0.48 +0.2
344,089 - GFF1029 0.48 -0.3
344,089 - GFF1029 0.48 -0.5
344,089 - GFF1029 0.48 -0.5
344,089 - GFF1029 0.48 -1.2
344,253 + GFF1029 0.85 -0.5
344,253 + GFF1029 0.85 +0.1
344,253 + GFF1029 0.85 +0.9
344,254 - GFF1029 0.85 -1.6
344,254 - GFF1029 0.85 -0.8
344,522 + +0.1
344,522 + +0.5
344,522 + -1.2
344,789 + GFF1030 0.28 -0.6
344,834 + GFF1030 0.32 +0.3
344,834 + GFF1030 0.32 +2.4
344,834 + GFF1030 0.32 -2.0
344,835 - GFF1030 0.32 +0.1
344,835 - GFF1030 0.32 -1.1
344,835 - GFF1030 0.32 +0.4
344,837 + GFF1030 0.33 +1.3
344,837 + GFF1030 0.33 +1.2
344,837 + GFF1030 0.33 +0.4
344,837 + GFF1030 0.33 +1.1
344,837 + GFF1030 0.33 +0.2
344,837 + GFF1030 0.33 -0.1
344,837 + GFF1030 0.33 +1.8
344,838 - GFF1030 0.33 +1.4
344,838 - GFF1030 0.33 -1.0
344,838 - GFF1030 0.33 -1.3
344,954 + GFF1030 0.43 +2.0
344,954 + GFF1030 0.43 +0.7
344,955 - GFF1030 0.43 +0.6
344,955 - GFF1030 0.43 -0.8
344,955 - GFF1030 0.43 -0.4
344,955 - GFF1030 0.43 -0.6
345,053 + GFF1030 0.52 +0.3
345,053 + GFF1030 0.52 +1.0
345,053 + GFF1030 0.52 +0.6
345,092 + GFF1030 0.55 +1.1
345,092 + GFF1030 0.55 +0.3
345,092 + GFF1030 0.55 +0.3
345,092 + GFF1030 0.55 +0.2
345,092 + GFF1030 0.55 -0.0
345,092 + GFF1030 0.55 -0.1
345,092 + GFF1030 0.55 +0.7
345,093 - GFF1030 0.55 -0.1
345,093 - GFF1030 0.55 -0.3
345,093 - GFF1030 0.55 -0.4
345,093 - GFF1030 0.55 -0.2
345,093 - GFF1030 0.55 -1.0
345,215 + GFF1030 0.66 -0.2
345,215 + GFF1030 0.66 +0.3
345,215 + GFF1030 0.66 -0.6
345,216 - GFF1030 0.66 -2.0
345,216 - GFF1030 0.66 +0.0
345,216 - GFF1030 0.66 +0.7
345,216 - GFF1030 0.66 +1.3
345,216 - GFF1030 0.66 -0.4

Or see this region's nucleotide sequence