Strain Fitness in Variovorax sp. SCN45 around GFF1022

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1020 and GFF1021 are separated by 104 nucleotidesGFF1021 and GFF1022 are separated by 43 nucleotidesGFF1022 and GFF1023 are separated by 7 nucleotidesGFF1023 and GFF1024 are separated by 13 nucleotides GFF1020 - hypothetical protein, at 338,050 to 338,220 GFF1020 GFF1021 - Transcriptional regulator, Xre-family with cupin domain, at 338,325 to 338,930 GFF1021 GFF1022 - Acetyltransferase, GNAT family, at 338,974 to 339,495 GFF1022 GFF1023 - UPF0311 protein RPA1785, at 339,503 to 339,985 GFF1023 GFF1024 - Aldo/keto reductase, SCO4109 family, at 339,999 to 340,967 GFF1024 Position (kb) 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 337.996 kb on + strandat 337.996 kb on + strandat 338.046 kb on + strandat 338.047 kb on - strandat 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.254 kb on + strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.315 kb on + strandat 338.316 kb on - strandat 338.327 kb on - strandat 338.449 kb on + strand, within GFF1021at 338.449 kb on + strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.518 kb on + strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.606 kb on - strand, within GFF1021at 338.941 kb on + strandat 338.991 kb on + strandat 338.991 kb on + strandat 338.992 kb on - strandat 338.992 kb on - strandat 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.062 kb on - strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.068 kb on - strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.182 kb on - strand, within GFF1022at 339.208 kb on + strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.451 kb on + strandat 339.451 kb on + strandat 339.452 kb on - strandat 339.452 kb on - strandat 339.504 kb on + strandat 339.505 kb on - strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.517 kb on - strandat 339.517 kb on - strandat 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.750 kb on + strand, within GFF1023at 339.750 kb on + strand, within GFF1023at 339.961 kb on + strandat 339.961 kb on + strandat 339.961 kb on + strandat 339.961 kb on + strandat 339.962 kb on - strandat 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.331 kb on - strand, within GFF1024at 340.402 kb on + strand, within GFF1024at 340.403 kb on - strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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337,996 + +0.3
337,996 + +0.1
338,046 + -0.1
338,047 - +0.6
338,132 + GFF1020 0.48 -0.3
338,132 + GFF1020 0.48 +0.4
338,132 + GFF1020 0.48 -0.8
338,132 + GFF1020 0.48 -0.7
338,132 + GFF1020 0.48 +1.0
338,133 - GFF1020 0.49 +1.8
338,133 - GFF1020 0.49 -0.3
338,133 - GFF1020 0.49 +0.3
338,133 - GFF1020 0.49 -0.1
338,187 + GFF1020 0.80 +0.4
338,187 + GFF1020 0.80 -0.4
338,187 + GFF1020 0.80 -0.9
338,187 + GFF1020 0.80 -0.2
338,187 + GFF1020 0.80 +2.2
338,187 + GFF1020 0.80 -0.8
338,187 + GFF1020 0.80 -0.6
338,188 - GFF1020 0.81 -1.5
338,188 - GFF1020 0.81 +0.4
338,204 + +0.3
338,204 + +0.8
338,204 + -1.2
338,204 + -0.1
338,204 + +0.4
338,204 + +0.0
338,204 + -0.6
338,205 - +0.0
338,205 - -0.6
338,205 - -0.6
338,205 - -1.3
338,254 + -0.2
338,255 - -1.4
338,255 - -0.1
338,255 - +0.7
338,315 + -0.7
338,316 - +0.4
338,327 - -0.7
338,449 + GFF1021 0.20 -0.6
338,449 + GFF1021 0.20 +0.2
338,450 - GFF1021 0.21 +0.4
338,450 - GFF1021 0.21 -1.3
338,450 - GFF1021 0.21 -0.5
338,518 + GFF1021 0.32 -2.0
338,519 - GFF1021 0.32 -0.0
338,519 - GFF1021 0.32 -1.3
338,605 + GFF1021 0.46 +0.4
338,605 + GFF1021 0.46 -0.6
338,605 + GFF1021 0.46 -1.0
338,605 + GFF1021 0.46 -1.5
338,606 - GFF1021 0.46 +0.5
338,941 + -0.4
338,991 + -0.0
338,991 + -0.4
338,992 - -0.3
338,992 - -0.5
339,061 + GFF1022 0.17 -0.5
339,061 + GFF1022 0.17 +0.3
339,061 + GFF1022 0.17 +0.2
339,061 + GFF1022 0.17 -1.2
339,061 + GFF1022 0.17 -0.3
339,061 + GFF1022 0.17 -0.2
339,062 - GFF1022 0.17 -0.7
339,067 + GFF1022 0.18 +0.1
339,067 + GFF1022 0.18 -0.2
339,067 + GFF1022 0.18 -1.2
339,067 + GFF1022 0.18 -0.4
339,067 + GFF1022 0.18 +0.4
339,068 - GFF1022 0.18 -0.9
339,181 + GFF1022 0.40 +0.4
339,181 + GFF1022 0.40 -0.2
339,181 + GFF1022 0.40 -0.6
339,181 + GFF1022 0.40 +0.0
339,182 - GFF1022 0.40 -1.4
339,208 + GFF1022 0.45 +0.3
339,209 - GFF1022 0.45 -0.2
339,209 - GFF1022 0.45 -1.6
339,209 - GFF1022 0.45 -0.3
339,214 + GFF1022 0.46 -0.3
339,214 + GFF1022 0.46 +0.1
339,214 + GFF1022 0.46 +0.8
339,214 + GFF1022 0.46 +0.4
339,214 + GFF1022 0.46 -0.6
339,214 + GFF1022 0.46 -2.7
339,214 + GFF1022 0.46 +0.5
339,214 + GFF1022 0.46 +0.0
339,215 - GFF1022 0.46 +0.3
339,215 - GFF1022 0.46 +0.5
339,215 - GFF1022 0.46 +1.7
339,215 - GFF1022 0.46 +0.4
339,215 - GFF1022 0.46 -0.2
339,215 - GFF1022 0.46 -0.3
339,215 - GFF1022 0.46 +0.5
339,215 - GFF1022 0.46 +0.0
339,215 - GFF1022 0.46 +0.7
339,215 - GFF1022 0.46 -0.6
339,215 - GFF1022 0.46 +0.4
339,215 - GFF1022 0.46 +0.7
339,215 - GFF1022 0.46 +0.1
339,235 + GFF1022 0.50 +0.0
339,235 + GFF1022 0.50 -0.6
339,235 + GFF1022 0.50 -0.1
339,235 + GFF1022 0.50 +1.4
339,235 + GFF1022 0.50 -0.1
339,236 - GFF1022 0.50 +1.4
339,236 - GFF1022 0.50 -1.4
339,236 - GFF1022 0.50 +0.3
339,236 - GFF1022 0.50 +0.4
339,236 - GFF1022 0.50 +0.1
339,236 - GFF1022 0.50 -1.2
339,451 + -2.2
339,451 + +0.7
339,452 - +0.4
339,452 - -2.5
339,504 + -0.8
339,505 - -0.5
339,516 + +1.0
339,516 + -0.2
339,516 + -0.1
339,516 + +0.0
339,516 + -0.4
339,516 + +0.8
339,517 - +0.3
339,517 - +0.3
339,630 + GFF1023 0.26 +0.3
339,630 + GFF1023 0.26 -0.6
339,630 + GFF1023 0.26 -1.0
339,630 + GFF1023 0.26 +0.0
339,630 + GFF1023 0.26 -0.5
339,630 + GFF1023 0.26 -0.2
339,630 + GFF1023 0.26 -0.2
339,631 - GFF1023 0.27 -1.5
339,631 - GFF1023 0.27 -1.0
339,631 - GFF1023 0.27 +0.4
339,631 - GFF1023 0.27 +0.2
339,631 - GFF1023 0.27 +3.0
339,717 + GFF1023 0.44 -0.8
339,717 + GFF1023 0.44 -0.4
339,717 + GFF1023 0.44 +0.6
339,717 + GFF1023 0.44 -0.4
339,717 + GFF1023 0.44 -0.6
339,718 - GFF1023 0.45 -1.0
339,718 - GFF1023 0.45 +0.3
339,718 - GFF1023 0.45 +0.1
339,718 - GFF1023 0.45 +0.3
339,718 - GFF1023 0.45 +1.1
339,718 - GFF1023 0.45 -0.9
339,718 - GFF1023 0.45 +1.2
339,718 - GFF1023 0.45 -0.1
339,718 - GFF1023 0.45 -1.3
339,750 + GFF1023 0.51 -0.0
339,750 + GFF1023 0.51 +0.4
339,961 + +0.1
339,961 + -0.9
339,961 + -0.9
339,961 + -1.0
339,962 - -0.1
340,183 + GFF1024 0.19 -1.4
340,183 + GFF1024 0.19 +0.2
340,183 + GFF1024 0.19 -0.7
340,183 + GFF1024 0.19 +0.2
340,183 + GFF1024 0.19 -1.6
340,183 + GFF1024 0.19 +0.5
340,183 + GFF1024 0.19 -0.2
340,183 + GFF1024 0.19 -0.3
340,184 - GFF1024 0.19 -0.3
340,184 - GFF1024 0.19 -1.2
340,184 - GFF1024 0.19 +0.5
340,184 - GFF1024 0.19 +0.3
340,184 - GFF1024 0.19 -1.0
340,184 - GFF1024 0.19 -2.9
340,184 - GFF1024 0.19 +0.6
340,184 - GFF1024 0.19 +0.1
340,184 - GFF1024 0.19 +0.7
340,240 + GFF1024 0.25 +0.4
340,240 + GFF1024 0.25 -0.0
340,241 - GFF1024 0.25 +0.6
340,241 - GFF1024 0.25 -0.0
340,241 - GFF1024 0.25 -0.6
340,241 - GFF1024 0.25 -0.6
340,241 - GFF1024 0.25 +0.0
340,297 + GFF1024 0.31 +0.3
340,297 + GFF1024 0.31 +0.3
340,297 + GFF1024 0.31 -0.2
340,298 - GFF1024 0.31 -0.6
340,298 - GFF1024 0.31 -0.1
340,298 - GFF1024 0.31 -0.4
340,331 - GFF1024 0.34 -0.1
340,402 + GFF1024 0.42 -0.9
340,403 - GFF1024 0.42 +0.2
340,411 + GFF1024 0.43 +1.0
340,411 + GFF1024 0.43 -0.3
340,411 + GFF1024 0.43 -0.9
340,411 + GFF1024 0.43 -0.9
340,411 + GFF1024 0.43 +0.0
340,411 + GFF1024 0.43 -2.3
340,411 + GFF1024 0.43 -0.3
340,411 + GFF1024 0.43 -0.6
340,412 - GFF1024 0.43 -0.1
340,412 - GFF1024 0.43 -0.6
340,412 - GFF1024 0.43 -0.6
340,412 - GFF1024 0.43 -0.2
340,412 - GFF1024 0.43 -1.4
340,412 - GFF1024 0.43 +3.0
340,492 + GFF1024 0.51 +0.9
340,492 + GFF1024 0.51 -0.4
340,492 + GFF1024 0.51 +0.1

Or see this region's nucleotide sequence