Experiment: Galactan from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03170 and ABI39_RS03175 overlap by 4 nucleotides ABI39_RS03175 and ABI39_RS03180 are separated by 2 nucleotides ABI39_RS03180 and ABI39_RS03185 are separated by 73 nucleotides ABI39_RS03185 and ABI39_RS03190 are separated by 10 nucleotides
ABI39_RS03170: ABI39_RS03170 - plasmid mobilization relaxosome protein MobC, at 919,585 to 919,974
_RS03170
ABI39_RS03175: ABI39_RS03175 - relaxase/mobilization nuclease domain-containing protein, at 919,971 to 920,897
_RS03175
ABI39_RS03180: ABI39_RS03180 - hypothetical protein, at 920,900 to 921,535
_RS03180
ABI39_RS03185: ABI39_RS03185 - macro domain-containing protein, at 921,609 to 922,304
_RS03185
ABI39_RS03190: ABI39_RS03190 - DUF4433 domain-containing protein, at 922,315 to 926,799
_RS03190
Position (kb) 920
921
922 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 920.081 kb on + strand, within ABI39_RS03175 at 920.201 kb on - strand, within ABI39_RS03175 at 920.303 kb on + strand, within ABI39_RS03175 at 920.440 kb on + strand, within ABI39_RS03175 at 920.473 kb on - strand, within ABI39_RS03175 at 920.473 kb on - strand, within ABI39_RS03175 at 920.493 kb on - strand, within ABI39_RS03175 at 920.558 kb on - strand, within ABI39_RS03175 at 920.603 kb on + strand, within ABI39_RS03175 at 920.604 kb on - strand, within ABI39_RS03175 at 920.784 kb on - strand, within ABI39_RS03175 at 920.929 kb on - strand at 921.280 kb on + strand, within ABI39_RS03180 at 921.281 kb on - strand, within ABI39_RS03180 at 921.338 kb on + strand, within ABI39_RS03180 at 921.577 kb on + strand at 921.604 kb on + strand at 921.608 kb on - strand at 921.644 kb on + strand at 921.645 kb on - strand at 921.645 kb on - strand at 921.745 kb on - strand, within ABI39_RS03185 at 921.799 kb on + strand, within ABI39_RS03185 at 921.906 kb on + strand, within ABI39_RS03185 at 921.962 kb on + strand, within ABI39_RS03185 at 921.980 kb on + strand, within ABI39_RS03185 at 921.981 kb on - strand, within ABI39_RS03185 at 922.374 kb on + strand at 922.405 kb on + strand at 922.405 kb on + strand at 922.405 kb on + strand at 922.407 kb on + strand at 922.410 kb on + strand at 922.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato (C) remove 920,081 + ABI39_RS03175 0.12 +0.4 920,201 - ABI39_RS03175 0.25 +0.7 920,303 + ABI39_RS03175 0.36 +0.5 920,440 + ABI39_RS03175 0.51 -0.1 920,473 - ABI39_RS03175 0.54 -0.3 920,473 - ABI39_RS03175 0.54 -1.4 920,493 - ABI39_RS03175 0.56 -1.6 920,558 - ABI39_RS03175 0.63 -0.3 920,603 + ABI39_RS03175 0.68 -0.4 920,604 - ABI39_RS03175 0.68 -0.2 920,784 - ABI39_RS03175 0.88 -0.1 920,929 - +0.7 921,280 + ABI39_RS03180 0.60 -0.8 921,281 - ABI39_RS03180 0.60 +0.6 921,338 + ABI39_RS03180 0.69 -0.2 921,577 + +2.1 921,604 + +1.8 921,608 - +0.2 921,644 + +2.2 921,645 - +3.8 921,645 - -0.1 921,745 - ABI39_RS03185 0.20 +0.3 921,799 + ABI39_RS03185 0.27 +0.1 921,906 + ABI39_RS03185 0.43 +5.1 921,962 + ABI39_RS03185 0.51 +2.7 921,980 + ABI39_RS03185 0.53 +0.3 921,981 - ABI39_RS03185 0.53 -0.2 922,374 + -0.0 922,405 + -1.2 922,405 + -0.9 922,405 + +1.1 922,407 + -0.3 922,410 + +0.9 922,508 + +0.3
Or see this region's nucleotide sequence