Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02905

Experiment: Galactan from Potato (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02895 and ABI39_RS02900 are separated by 21 nucleotidesABI39_RS02900 and ABI39_RS02905 are separated by 100 nucleotidesABI39_RS02905 and ABI39_RS02910 are separated by 15 nucleotides ABI39_RS02895: ABI39_RS02895 - ATP-binding protein, at 837,711 to 838,841 _RS02895 ABI39_RS02900: ABI39_RS02900 - hypothetical protein, at 838,863 to 839,504 _RS02900 ABI39_RS02905: ABI39_RS02905 - SusD family outer membrane lipoprotein NanU, at 839,605 to 841,194 _RS02905 ABI39_RS02910: ABI39_RS02910 - TonB-dependent receptor, at 841,210 to 844,530 _RS02910 Position (kb) 839 840 841 842Strain fitness (log2 ratio) -1 0 1 2at 840.317 kb on + strand, within ABI39_RS02905at 840.337 kb on - strand, within ABI39_RS02905at 840.337 kb on - strand, within ABI39_RS02905at 840.337 kb on - strand, within ABI39_RS02905at 840.340 kb on - strand, within ABI39_RS02905at 840.600 kb on - strand, within ABI39_RS02905at 841.029 kb on + strand, within ABI39_RS02905at 841.054 kb on + strandat 841.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato (C)
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840,317 + ABI39_RS02905 0.45 -0.5
840,337 - ABI39_RS02905 0.46 +0.9
840,337 - ABI39_RS02905 0.46 +0.5
840,337 - ABI39_RS02905 0.46 -0.2
840,340 - ABI39_RS02905 0.46 -0.2
840,600 - ABI39_RS02905 0.63 +2.3
841,029 + ABI39_RS02905 0.90 +1.6
841,054 + -1.3
841,143 + +1.4

Or see this region's nucleotide sequence