Strain Fitness in Variovorax sp. SCN45 around GFF896

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF895 and GFF896 are separated by 183 nucleotidesGFF896 and GFF897 are separated by 34 nucleotides GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307 GFF895 GFF896 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,491 to 207,282 GFF896 GFF897 - putative oxygenase subunit, at 207,317 to 208,558 GFF897 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 205.706 kb on + strand, within GFF895at 205.707 kb on - strand, within GFF895at 205.782 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.265 kb on - strandat 206.324 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.944 kb on + strand, within GFF896at 207.208 kb on + strandat 207.280 kb on + strandat 207.280 kb on + strandat 207.281 kb on - strandat 207.281 kb on - strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.842 kb on + strand, within GFF897at 207.842 kb on + strand, within GFF897at 207.842 kb on + strand, within GFF897at 207.843 kb on - strand, within GFF897at 207.914 kb on + strand, within GFF897at 207.915 kb on - strand, within GFF897at 208.265 kb on + strand, within GFF897

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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205,706 + GFF895 0.42 +0.4
205,707 - GFF895 0.42 -0.2
205,782 - GFF895 0.49 -0.0
206,106 - GFF895 0.81 +0.5
206,106 - GFF895 0.81 -0.6
206,106 - GFF895 0.81 +0.0
206,114 + GFF895 0.81 +0.4
206,114 + GFF895 0.81 +0.4
206,114 + GFF895 0.81 -0.3
206,114 + GFF895 0.81 +0.8
206,114 + GFF895 0.81 +0.1
206,114 + GFF895 0.81 +0.4
206,114 + GFF895 0.81 +1.0
206,114 + GFF895 0.81 +1.1
206,114 + GFF895 0.81 -1.0
206,115 - GFF895 0.81 +0.8
206,115 - GFF895 0.81 +0.3
206,115 - GFF895 0.81 -0.8
206,115 - GFF895 0.81 +0.2
206,115 - GFF895 0.81 +2.0
206,115 - GFF895 0.81 -0.6
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 +0.4
206,115 - GFF895 0.81 -0.1
206,115 - GFF895 0.81 +4.1
206,265 - -0.8
206,324 - +0.4
206,431 - +0.4
206,431 - -1.6
206,431 - +0.8
206,435 + -0.4
206,435 + -1.6
206,435 + +1.2
206,435 + +1.2
206,435 + +0.4
206,435 + -1.7
206,435 + -1.8
206,435 + -0.7
206,435 + +0.5
206,435 + -0.0
206,435 + -0.2
206,435 + -0.1
206,436 - +0.0
206,436 - -1.0
206,436 - -1.4
206,436 - +0.4
206,436 - -0.6
206,436 - -0.8
206,436 - -0.6
206,436 - +0.5
206,436 - -0.8
206,436 - -1.3
206,436 - +0.2
206,546 + +0.2
206,546 + -0.6
206,546 + +1.5
206,547 - -2.5
206,547 - -1.4
206,547 - -0.1
206,547 - -0.7
206,547 - +0.0
206,764 + GFF896 0.34 +0.1
206,764 + GFF896 0.34 -0.3
206,764 + GFF896 0.34 -1.0
206,764 + GFF896 0.34 -0.4
206,765 - GFF896 0.35 -0.6
206,765 - GFF896 0.35 -0.0
206,765 - GFF896 0.35 -1.0
206,765 - GFF896 0.35 +0.1
206,765 - GFF896 0.35 +0.4
206,765 - GFF896 0.35 -0.6
206,765 - GFF896 0.35 -1.2
206,944 + GFF896 0.57 +1.4
207,208 + -0.0
207,280 + -0.8
207,280 + -0.3
207,281 - -1.0
207,281 - -2.9
207,429 + -0.1
207,429 + +0.4
207,429 + -0.6
207,429 + -0.1
207,429 + -0.2
207,429 + -1.6
207,429 + -0.5
207,430 - +0.4
207,430 - -0.2
207,430 - +1.8
207,430 - +0.1
207,842 + GFF897 0.42 -0.5
207,842 + GFF897 0.42 -0.7
207,842 + GFF897 0.42 -0.2
207,843 - GFF897 0.42 -1.2
207,914 + GFF897 0.48 -0.3
207,915 - GFF897 0.48 +0.2
208,265 + GFF897 0.76 -0.2

Or see this region's nucleotide sequence