Strain Fitness in Variovorax sp. SCN45 around GFF892

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF890 and GFF891 are separated by 319 nucleotidesGFF891 and GFF892 are separated by 12 nucleotidesGFF892 and GFF893 overlap by 8 nucleotides GFF890 - Two-component system sensor histidine kinase, at 200,254 to 202,221 GFF890 GFF891 - Gfa-like protein, at 202,541 to 202,843 GFF891 GFF892 - FIG016502: iron uptake protein, at 202,856 to 203,179 GFF892 GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857 GFF893 Position (kb) 202 203 204Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 201.863 kb on + strand, within GFF890at 201.863 kb on + strand, within GFF890at 201.864 kb on - strand, within GFF890at 201.864 kb on - strand, within GFF890at 201.914 kb on + strand, within GFF890at 201.915 kb on - strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.977 kb on + strand, within GFF890at 201.978 kb on - strand, within GFF890at 201.978 kb on - strand, within GFF890at 201.978 kb on - strand, within GFF890at 202.213 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.313 kb on - strandat 202.313 kb on - strandat 202.352 kb on + strandat 202.353 kb on - strandat 202.365 kb on + strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.438 kb on + strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.731 kb on + strand, within GFF891at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.516 kb on - strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.911 kb on + strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.143 kb on - strand, within GFF893at 204.143 kb on - strand, within GFF893

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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201,863 + GFF890 0.82 -0.1
201,863 + GFF890 0.82 +0.4
201,864 - GFF890 0.82 -1.5
201,864 - GFF890 0.82 +0.2
201,914 + GFF890 0.84 +0.1
201,915 - GFF890 0.84 -0.8
201,977 + GFF890 0.88 +0.3
201,977 + GFF890 0.88 +0.9
201,977 + GFF890 0.88 -3.8
201,977 + GFF890 0.88 +0.1
201,978 - GFF890 0.88 -0.6
201,978 - GFF890 0.88 -0.2
201,978 - GFF890 0.88 -0.4
202,213 + +0.6
202,221 + +0.6
202,221 + -1.6
202,221 + -0.0
202,222 - +0.9
202,222 - -0.1
202,222 - -0.4
202,222 - -0.0
202,312 + +0.2
202,312 + -0.3
202,312 + -2.0
202,312 + -1.0
202,312 + -0.9
202,312 + +0.3
202,312 + -0.2
202,313 - +0.5
202,313 - -0.5
202,352 + +0.4
202,353 - -1.8
202,365 + -1.7
202,366 - -0.7
202,366 - +0.3
202,366 - +0.6
202,438 + +0.8
202,494 - -0.7
202,494 - +0.3
202,494 - +0.2
202,577 + GFF891 0.12 +0.5
202,577 + GFF891 0.12 +0.2
202,577 + GFF891 0.12 +0.4
202,577 + GFF891 0.12 -1.8
202,578 - GFF891 0.12 +0.1
202,578 - GFF891 0.12 +0.0
202,578 - GFF891 0.12 +1.0
202,578 - GFF891 0.12 -1.2
202,731 + GFF891 0.63 -0.0
203,515 + GFF893 0.20 -0.6
203,515 + GFF893 0.20 -0.4
203,515 + GFF893 0.20 -0.9
203,515 + GFF893 0.20 -0.1
203,515 + GFF893 0.20 -1.1
203,515 + GFF893 0.20 -0.6
203,516 - GFF893 0.20 -0.2
203,740 + GFF893 0.34 +0.2
203,740 + GFF893 0.34 -0.5
203,740 + GFF893 0.34 -0.9
203,741 - GFF893 0.34 -0.6
203,741 - GFF893 0.34 +0.1
203,741 - GFF893 0.34 -0.6
203,741 - GFF893 0.34 -1.1
203,911 + GFF893 0.44 -0.2
203,912 - GFF893 0.44 -0.1
203,912 - GFF893 0.44 +0.8
203,923 + GFF893 0.45 -0.0
203,923 + GFF893 0.45 -0.8
203,923 + GFF893 0.45 -1.2
203,923 + GFF893 0.45 +0.7
203,923 + GFF893 0.45 +0.0
203,924 - GFF893 0.45 -0.5
203,924 - GFF893 0.45 -0.4
203,924 - GFF893 0.45 -0.3
203,924 - GFF893 0.45 -0.0
203,924 - GFF893 0.45 -0.1
203,924 - GFF893 0.45 +0.6
203,924 - GFF893 0.45 +2.0
204,142 + GFF893 0.58 -0.1
204,142 + GFF893 0.58 -0.5
204,142 + GFF893 0.58 +0.3
204,142 + GFF893 0.58 -0.4
204,143 - GFF893 0.58 -0.8
204,143 - GFF893 0.58 +0.4

Or see this region's nucleotide sequence