Strain Fitness in Variovorax sp. SCN45 around GFF7376

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7375 and GFF7376 are separated by 16 nucleotidesGFF7376 and GFF7377 are separated by 152 nucleotides GFF7375 - Arginine:pyruvate transaminase, at 4,748 to 5,956 GFF7375 GFF7376 - Transcriptional regulator, LysR family, at 5,973 to 6,884 GFF7376 GFF7377 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 7,037 to 8,560 GFF7377 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.034 kb on + strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.035 kb on - strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.145 kb on + strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.146 kb on - strand, within GFF7375at 5.277 kb on + strand, within GFF7375at 5.371 kb on - strand, within GFF7375at 5.415 kb on - strand, within GFF7375at 5.437 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.493 kb on + strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.494 kb on - strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.541 kb on + strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.542 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.653 kb on - strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.727 kb on + strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 5.728 kb on - strand, within GFF7375at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.277 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.313 kb on + strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.314 kb on - strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.376 kb on + strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.377 kb on - strand, within GFF7376at 6.391 kb on + strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.392 kb on - strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.406 kb on + strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.407 kb on - strand, within GFF7376at 6.862 kb on + strandat 6.862 kb on + strandat 6.862 kb on + strandat 6.863 kb on - strandat 6.939 kb on - strandat 6.971 kb on + strandat 6.971 kb on + strandat 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.466 kb on + strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.467 kb on - strand, within GFF7377at 7.575 kb on - strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.603 kb on + strand, within GFF7377at 7.604 kb on - strand, within GFF7377at 7.604 kb on - strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.766 kb on + strand, within GFF7377at 7.767 kb on - strand, within GFF7377at 7.767 kb on - strand, within GFF7377at 7.804 kb on + strand, within GFF7377

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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5,034 + GFF7375 0.24 -1.1
5,034 + GFF7375 0.24 -0.8
5,034 + GFF7375 0.24 +0.2
5,034 + GFF7375 0.24 -0.3
5,035 - GFF7375 0.24 -0.1
5,035 - GFF7375 0.24 +0.2
5,035 - GFF7375 0.24 -0.7
5,035 - GFF7375 0.24 -0.5
5,035 - GFF7375 0.24 -1.3
5,035 - GFF7375 0.24 -0.4
5,145 + GFF7375 0.33 -0.5
5,145 + GFF7375 0.33 -0.1
5,145 + GFF7375 0.33 -0.5
5,145 + GFF7375 0.33 +0.3
5,145 + GFF7375 0.33 +0.2
5,145 + GFF7375 0.33 +0.7
5,145 + GFF7375 0.33 -0.5
5,146 - GFF7375 0.33 +0.0
5,146 - GFF7375 0.33 -0.1
5,146 - GFF7375 0.33 +0.6
5,146 - GFF7375 0.33 -0.1
5,146 - GFF7375 0.33 -0.7
5,146 - GFF7375 0.33 -0.7
5,146 - GFF7375 0.33 +0.5
5,146 - GFF7375 0.33 -0.5
5,146 - GFF7375 0.33 -0.7
5,146 - GFF7375 0.33 -0.7
5,146 - GFF7375 0.33 +0.9
5,146 - GFF7375 0.33 -0.5
5,146 - GFF7375 0.33 -1.1
5,146 - GFF7375 0.33 +0.5
5,146 - GFF7375 0.33 +0.7
5,277 + GFF7375 0.44 -0.3
5,371 - GFF7375 0.52 -0.1
5,415 - GFF7375 0.55 +0.4
5,437 + GFF7375 0.57 +0.1
5,493 + GFF7375 0.62 +0.6
5,493 + GFF7375 0.62 -1.1
5,493 + GFF7375 0.62 +0.3
5,493 + GFF7375 0.62 +1.0
5,493 + GFF7375 0.62 -0.2
5,493 + GFF7375 0.62 +0.9
5,494 - GFF7375 0.62 +0.2
5,494 - GFF7375 0.62 -1.8
5,494 - GFF7375 0.62 +1.0
5,494 - GFF7375 0.62 +0.9
5,494 - GFF7375 0.62 -0.1
5,541 + GFF7375 0.66 -0.4
5,541 + GFF7375 0.66 -0.9
5,542 - GFF7375 0.66 +1.4
5,542 - GFF7375 0.66 +0.4
5,542 - GFF7375 0.66 +0.1
5,542 - GFF7375 0.66 -0.6
5,653 - GFF7375 0.75 +0.1
5,653 - GFF7375 0.75 -1.4
5,727 + GFF7375 0.81 -0.0
5,727 + GFF7375 0.81 -0.1
5,727 + GFF7375 0.81 -0.6
5,727 + GFF7375 0.81 -1.0
5,728 - GFF7375 0.81 +0.6
5,728 - GFF7375 0.81 +0.2
5,728 - GFF7375 0.81 -0.7
5,728 - GFF7375 0.81 -0.0
5,728 - GFF7375 0.81 +1.5
5,728 - GFF7375 0.81 -1.3
6,277 + GFF7376 0.33 +0.9
6,277 + GFF7376 0.33 +0.5
6,277 + GFF7376 0.33 +0.4
6,313 + GFF7376 0.37 +1.7
6,313 + GFF7376 0.37 +0.5
6,313 + GFF7376 0.37 -0.1
6,313 + GFF7376 0.37 +0.5
6,313 + GFF7376 0.37 +1.9
6,313 + GFF7376 0.37 +0.1
6,313 + GFF7376 0.37 +0.1
6,313 + GFF7376 0.37 -0.9
6,314 - GFF7376 0.37 -0.1
6,314 - GFF7376 0.37 +1.2
6,314 - GFF7376 0.37 +0.9
6,314 - GFF7376 0.37 -0.2
6,314 - GFF7376 0.37 +0.1
6,314 - GFF7376 0.37 -0.7
6,314 - GFF7376 0.37 -1.0
6,376 + GFF7376 0.44 -0.1
6,376 + GFF7376 0.44 +1.5
6,376 + GFF7376 0.44 -0.8
6,376 + GFF7376 0.44 -0.9
6,376 + GFF7376 0.44 +0.5
6,376 + GFF7376 0.44 -1.1
6,376 + GFF7376 0.44 -0.2
6,376 + GFF7376 0.44 -1.0
6,376 + GFF7376 0.44 -0.1
6,376 + GFF7376 0.44 -0.5
6,377 - GFF7376 0.44 -0.1
6,377 - GFF7376 0.44 -1.1
6,377 - GFF7376 0.44 +0.8
6,377 - GFF7376 0.44 -1.4
6,377 - GFF7376 0.44 +0.5
6,377 - GFF7376 0.44 -0.8
6,377 - GFF7376 0.44 +0.1
6,391 + GFF7376 0.46 +0.4
6,392 - GFF7376 0.46 +0.1
6,392 - GFF7376 0.46 -0.6
6,392 - GFF7376 0.46 -0.2
6,406 + GFF7376 0.47 -0.1
6,406 + GFF7376 0.47 -0.5
6,407 - GFF7376 0.48 -0.4
6,407 - GFF7376 0.48 +0.3
6,862 + -0.3
6,862 + -0.6
6,862 + +0.6
6,863 - +0.6
6,939 - +0.0
6,971 + -0.6
6,971 + +0.1
7,466 + GFF7377 0.28 -0.2
7,466 + GFF7377 0.28 -1.3
7,466 + GFF7377 0.28 -1.8
7,466 + GFF7377 0.28 +0.1
7,466 + GFF7377 0.28 -1.6
7,466 + GFF7377 0.28 +0.9
7,467 - GFF7377 0.28 -0.8
7,467 - GFF7377 0.28 +0.5
7,467 - GFF7377 0.28 -1.7
7,467 - GFF7377 0.28 -0.7
7,467 - GFF7377 0.28 +2.0
7,575 - GFF7377 0.35 +0.1
7,603 + GFF7377 0.37 +1.0
7,603 + GFF7377 0.37 -1.6
7,603 + GFF7377 0.37 -0.5
7,603 + GFF7377 0.37 +0.4
7,603 + GFF7377 0.37 +0.2
7,603 + GFF7377 0.37 +0.7
7,604 - GFF7377 0.37 -0.9
7,604 - GFF7377 0.37 -0.1
7,766 + GFF7377 0.48 +0.5
7,766 + GFF7377 0.48 -1.4
7,766 + GFF7377 0.48 -0.4
7,766 + GFF7377 0.48 +1.0
7,766 + GFF7377 0.48 +0.0
7,766 + GFF7377 0.48 -0.2
7,767 - GFF7377 0.48 -0.5
7,767 - GFF7377 0.48 -0.2
7,804 + GFF7377 0.50 -0.6

Or see this region's nucleotide sequence