Strain Fitness in Variovorax sp. SCN45 around GFF7312

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7310 and GFF7311 are separated by 47 nucleotidesGFF7311 and GFF7312 are separated by 20 nucleotidesGFF7312 and GFF7313 are separated by 66 nucleotidesGFF7313 and GFF7314 are separated by 73 nucleotides GFF7310 - tRNA-(cytosine32)-2-thiocytidine synthetase TtcA, at 4,775 to 5,707 GFF7310 GFF7311 - Putative transmembrane lipoprotein, at 5,755 to 6,375 GFF7311 GFF7312 - Phosphoglycerate mutase (EC 5.4.2.11), at 6,396 to 7,040 GFF7312 GFF7313 - hypothetical protein, at 7,107 to 7,817 GFF7313 GFF7314 - no description, at 7,891 to 8,637 GFF7314 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.510 kb on + strand, within GFF7310at 5.511 kb on - strand, within GFF7310at 5.511 kb on - strand, within GFF7310at 5.511 kb on - strand, within GFF7310at 5.511 kb on - strand, within GFF7310at 5.511 kb on - strand, within GFF7310at 5.878 kb on + strand, within GFF7311at 5.878 kb on + strand, within GFF7311at 5.878 kb on + strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.879 kb on - strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.998 kb on + strand, within GFF7311at 5.999 kb on - strand, within GFF7311at 5.999 kb on - strand, within GFF7311at 5.999 kb on - strand, within GFF7311at 6.061 kb on + strand, within GFF7311at 6.061 kb on + strand, within GFF7311at 6.061 kb on + strand, within GFF7311at 6.062 kb on - strand, within GFF7311at 6.062 kb on - strand, within GFF7311at 6.079 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.103 kb on + strand, within GFF7311at 6.104 kb on - strand, within GFF7311at 6.104 kb on - strand, within GFF7311at 6.104 kb on - strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.106 kb on + strand, within GFF7311at 6.107 kb on - strand, within GFF7311at 6.107 kb on - strand, within GFF7311at 6.107 kb on - strand, within GFF7311at 6.121 kb on + strand, within GFF7311at 6.121 kb on + strand, within GFF7311at 6.136 kb on + strand, within GFF7311at 6.136 kb on + strand, within GFF7311at 6.137 kb on - strand, within GFF7311at 6.175 kb on + strand, within GFF7311at 6.175 kb on + strand, within GFF7311at 6.175 kb on + strand, within GFF7311at 6.176 kb on - strand, within GFF7311at 6.176 kb on - strand, within GFF7311at 6.176 kb on - strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.229 kb on + strand, within GFF7311at 6.230 kb on - strand, within GFF7311at 6.230 kb on - strand, within GFF7311at 6.230 kb on - strand, within GFF7311at 6.230 kb on - strand, within GFF7311at 6.230 kb on - strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.259 kb on + strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.260 kb on - strand, within GFF7311at 6.374 kb on - strandat 6.374 kb on - strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.383 kb on + strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.384 kb on - strandat 6.559 kb on - strand, within GFF7312at 6.559 kb on - strand, within GFF7312at 6.559 kb on - strand, within GFF7312at 6.877 kb on - strand, within GFF7312at 6.877 kb on - strand, within GFF7312at 7.038 kb on + strandat 7.038 kb on + strandat 7.038 kb on + strandat 7.039 kb on - strandat 7.039 kb on - strandat 7.039 kb on - strandat 7.117 kb on + strandat 7.117 kb on + strandat 7.117 kb on + strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.137 kb on + strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.138 kb on - strandat 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.257 kb on + strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.258 kb on - strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.263 kb on + strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.264 kb on - strand, within GFF7313at 7.333 kb on + strand, within GFF7313at 7.333 kb on + strand, within GFF7313at 7.333 kb on + strand, within GFF7313at 7.334 kb on - strand, within GFF7313at 7.334 kb on - strand, within GFF7313at 7.431 kb on + strand, within GFF7313at 7.432 kb on - strand, within GFF7313at 7.432 kb on - strand, within GFF7313at 7.432 kb on - strand, within GFF7313at 7.432 kb on - strand, within GFF7313at 7.432 kb on - strand, within GFF7313at 7.445 kb on + strand, within GFF7313at 7.445 kb on + strand, within GFF7313at 7.589 kb on + strand, within GFF7313at 7.657 kb on + strand, within GFF7313at 7.657 kb on + strand, within GFF7313at 7.658 kb on - strand, within GFF7313at 7.658 kb on - strand, within GFF7313at 7.789 kb on + strandat 7.790 kb on - strandat 7.790 kb on - strandat 7.803 kb on + strandat 7.804 kb on - strandat 7.811 kb on + strandat 7.812 kb on - strandat 7.815 kb on + strandat 7.825 kb on + strandat 7.825 kb on + strandat 7.825 kb on + strandat 7.825 kb on + strandat 7.863 kb on + strandat 7.880 kb on + strandat 7.881 kb on - strandat 7.895 kb on + strandat 7.896 kb on - strandat 7.896 kb on - strandat 7.896 kb on - strandat 7.901 kb on + strandat 7.923 kb on + strandat 7.924 kb on - strandat 7.924 kb on - strandat 8.015 kb on - strand, within GFF7314at 8.030 kb on + strand, within GFF7314at 8.030 kb on + strand, within GFF7314

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
5,510 + GFF7310 0.79 +0.4
5,511 - GFF7310 0.79 -0.1
5,511 - GFF7310 0.79 +2.0
5,511 - GFF7310 0.79 +0.4
5,511 - GFF7310 0.79 -0.0
5,511 - GFF7310 0.79 +0.8
5,878 + GFF7311 0.20 -0.1
5,878 + GFF7311 0.20 -0.4
5,878 + GFF7311 0.20 -0.0
5,879 - GFF7311 0.20 -0.1
5,879 - GFF7311 0.20 +0.3
5,879 - GFF7311 0.20 -1.4
5,879 - GFF7311 0.20 +0.8
5,879 - GFF7311 0.20 -0.5
5,879 - GFF7311 0.20 -0.3
5,879 - GFF7311 0.20 +0.0
5,879 - GFF7311 0.20 -2.5
5,879 - GFF7311 0.20 -0.3
5,879 - GFF7311 0.20 -0.4
5,879 - GFF7311 0.20 -1.6
5,998 + GFF7311 0.39 -0.7
5,998 + GFF7311 0.39 -0.1
5,998 + GFF7311 0.39 -0.0
5,998 + GFF7311 0.39 -0.6
5,998 + GFF7311 0.39 -0.1
5,998 + GFF7311 0.39 -0.1
5,998 + GFF7311 0.39 -0.4
5,999 - GFF7311 0.39 -0.3
5,999 - GFF7311 0.39 -0.4
5,999 - GFF7311 0.39 +0.4
6,061 + GFF7311 0.49 -0.6
6,061 + GFF7311 0.49 -1.7
6,061 + GFF7311 0.49 -0.7
6,062 - GFF7311 0.49 -0.0
6,062 - GFF7311 0.49 -0.4
6,079 + GFF7311 0.52 -0.1
6,103 + GFF7311 0.56 -0.9
6,103 + GFF7311 0.56 +0.8
6,103 + GFF7311 0.56 -0.8
6,103 + GFF7311 0.56 -0.6
6,103 + GFF7311 0.56 -0.3
6,103 + GFF7311 0.56 +1.0
6,104 - GFF7311 0.56 +2.6
6,104 - GFF7311 0.56 -0.7
6,104 - GFF7311 0.56 -1.3
6,106 + GFF7311 0.57 -2.3
6,106 + GFF7311 0.57 -0.3
6,106 + GFF7311 0.57 +0.0
6,106 + GFF7311 0.57 +0.7
6,106 + GFF7311 0.57 +0.5
6,106 + GFF7311 0.57 -1.7
6,106 + GFF7311 0.57 -1.3
6,107 - GFF7311 0.57 +0.2
6,107 - GFF7311 0.57 -1.0
6,107 - GFF7311 0.57 -0.1
6,121 + GFF7311 0.59 -3.2
6,121 + GFF7311 0.59 -0.4
6,136 + GFF7311 0.61 -0.8
6,136 + GFF7311 0.61 -1.6
6,137 - GFF7311 0.62 -0.6
6,175 + GFF7311 0.68 -0.8
6,175 + GFF7311 0.68 -0.6
6,175 + GFF7311 0.68 -0.2
6,176 - GFF7311 0.68 +2.6
6,176 - GFF7311 0.68 -0.4
6,176 - GFF7311 0.68 -0.2
6,229 + GFF7311 0.76 +1.3
6,229 + GFF7311 0.76 +0.1
6,229 + GFF7311 0.76 -0.1
6,229 + GFF7311 0.76 +0.7
6,229 + GFF7311 0.76 -0.0
6,229 + GFF7311 0.76 -0.8
6,230 - GFF7311 0.76 +0.0
6,230 - GFF7311 0.76 +0.0
6,230 - GFF7311 0.76 -0.2
6,230 - GFF7311 0.76 -0.1
6,230 - GFF7311 0.76 -0.4
6,259 + GFF7311 0.81 +0.5
6,259 + GFF7311 0.81 +0.1
6,259 + GFF7311 0.81 +0.1
6,259 + GFF7311 0.81 -0.0
6,259 + GFF7311 0.81 -0.7
6,259 + GFF7311 0.81 +0.6
6,259 + GFF7311 0.81 -0.7
6,260 - GFF7311 0.81 -0.6
6,260 - GFF7311 0.81 +1.3
6,260 - GFF7311 0.81 +0.5
6,260 - GFF7311 0.81 +0.2
6,260 - GFF7311 0.81 -1.1
6,260 - GFF7311 0.81 -0.8
6,260 - GFF7311 0.81 -0.1
6,260 - GFF7311 0.81 -0.6
6,260 - GFF7311 0.81 -1.2
6,374 - -0.7
6,374 - -0.4
6,383 + -0.2
6,383 + -0.2
6,383 + -0.4
6,383 + +0.2
6,383 + -1.5
6,383 + -0.2
6,383 + -0.6
6,383 + +0.9
6,383 + -0.3
6,384 - +1.1
6,384 - +0.7
6,384 - +0.4
6,384 - -0.1
6,384 - -0.2
6,384 - -1.0
6,384 - -0.6
6,384 - -0.9
6,384 - -0.9
6,559 - GFF7312 0.25 -0.6
6,559 - GFF7312 0.25 -0.6
6,559 - GFF7312 0.25 +0.2
6,877 - GFF7312 0.75 -0.3
6,877 - GFF7312 0.75 -0.6
7,038 + -1.2
7,038 + +0.8
7,038 + -0.2
7,039 - -0.6
7,039 - +0.7
7,039 - -1.2
7,117 + -0.6
7,117 + -0.3
7,117 + -0.5
7,137 + -0.6
7,137 + -0.1
7,137 + +0.7
7,137 + +0.7
7,137 + -0.0
7,137 + +1.0
7,138 - -0.5
7,138 - -1.7
7,138 - -0.7
7,138 - +1.4
7,138 - -0.6
7,138 - -1.1
7,138 - -0.7
7,138 - +1.1
7,138 - -0.1
7,138 - +0.1
7,138 - -0.2
7,138 - +0.3
7,138 - +0.6
7,138 - -0.7
7,257 + GFF7313 0.21 -1.7
7,257 + GFF7313 0.21 -0.2
7,257 + GFF7313 0.21 +0.8
7,257 + GFF7313 0.21 -0.1
7,257 + GFF7313 0.21 +1.1
7,257 + GFF7313 0.21 +0.8
7,257 + GFF7313 0.21 +0.4
7,257 + GFF7313 0.21 +0.4
7,257 + GFF7313 0.21 -0.2
7,257 + GFF7313 0.21 -0.4
7,257 + GFF7313 0.21 +0.4
7,257 + GFF7313 0.21 +0.4
7,258 - GFF7313 0.21 -1.8
7,258 - GFF7313 0.21 +0.4
7,258 - GFF7313 0.21 -0.5
7,258 - GFF7313 0.21 -0.6
7,258 - GFF7313 0.21 +0.3
7,258 - GFF7313 0.21 -0.5
7,258 - GFF7313 0.21 -1.2
7,258 - GFF7313 0.21 -0.3
7,258 - GFF7313 0.21 -0.8
7,258 - GFF7313 0.21 -0.9
7,258 - GFF7313 0.21 -0.8
7,258 - GFF7313 0.21 -1.2
7,258 - GFF7313 0.21 -0.7
7,258 - GFF7313 0.21 +1.1
7,258 - GFF7313 0.21 -0.7
7,258 - GFF7313 0.21 -0.1
7,258 - GFF7313 0.21 -0.3
7,258 - GFF7313 0.21 -1.0
7,263 + GFF7313 0.22 -1.3
7,263 + GFF7313 0.22 -0.8
7,263 + GFF7313 0.22 +0.2
7,263 + GFF7313 0.22 -0.1
7,263 + GFF7313 0.22 +2.6
7,263 + GFF7313 0.22 -1.8
7,264 - GFF7313 0.22 +0.3
7,264 - GFF7313 0.22 -0.3
7,264 - GFF7313 0.22 +0.6
7,264 - GFF7313 0.22 +2.3
7,264 - GFF7313 0.22 -0.9
7,264 - GFF7313 0.22 -0.7
7,264 - GFF7313 0.22 -0.6
7,264 - GFF7313 0.22 -0.3
7,264 - GFF7313 0.22 +0.4
7,333 + GFF7313 0.32 +0.0
7,333 + GFF7313 0.32 +0.4
7,333 + GFF7313 0.32 -0.9
7,334 - GFF7313 0.32 -0.5
7,334 - GFF7313 0.32 -0.8
7,431 + GFF7313 0.46 -1.5
7,432 - GFF7313 0.46 -0.1
7,432 - GFF7313 0.46 -0.4
7,432 - GFF7313 0.46 -0.6
7,432 - GFF7313 0.46 -0.5
7,432 - GFF7313 0.46 +1.0
7,445 + GFF7313 0.48 +1.0
7,445 + GFF7313 0.48 -0.4
7,589 + GFF7313 0.68 +0.2
7,657 + GFF7313 0.77 +1.0
7,657 + GFF7313 0.77 +0.8
7,658 - GFF7313 0.77 -0.7
7,658 - GFF7313 0.77 -1.1
7,789 + -0.1
7,790 - +0.7
7,790 - -0.2
7,803 + +1.0
7,804 - -0.9
7,811 + -0.3
7,812 - -0.0
7,815 + +0.1
7,825 + +0.5
7,825 + -1.5
7,825 + +1.2
7,825 + -0.4
7,863 + -0.2
7,880 + +0.4
7,881 - -1.1
7,895 + +0.4
7,896 - -0.2
7,896 - -0.0
7,896 - +0.4
7,901 + -0.0
7,923 + -0.1
7,924 - +0.5
7,924 - +0.7
8,015 - GFF7314 0.17 +0.3
8,030 + GFF7314 0.19 -0.8
8,030 + GFF7314 0.19 +1.0

Or see this region's nucleotide sequence