Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6709 and GFF6710 overlap by 1 nucleotides GFF6710 and GFF6711 are separated by 23 nucleotides GFF6711 and GFF6712 overlap by 1 nucleotides
GFF6709 - Putative hemagglutinin-related protein, at 17,162 to 18,418
GFF6709
GFF6710 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 18,418 to 19,371
GFF6710
GFF6711 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 19,395 to 20,219
GFF6711
GFF6712 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 20,219 to 21,259
GFF6712
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.471 kb on + strand, within GFF6709 at 17.472 kb on - strand, within GFF6709 at 17.579 kb on + strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.580 kb on - strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.624 kb on + strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.625 kb on - strand, within GFF6709 at 17.699 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.996 kb on + strand, within GFF6709 at 17.997 kb on - strand, within GFF6709 at 18.038 kb on + strand, within GFF6709 at 18.113 kb on + strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.114 kb on - strand, within GFF6709 at 18.255 kb on - strand, within GFF6709 at 18.255 kb on - strand, within GFF6709 at 18.296 kb on + strand at 18.297 kb on - strand at 18.297 kb on - strand at 18.375 kb on - strand at 18.439 kb on + strand at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.064 kb on - strand, within GFF6710 at 19.307 kb on - strand at 19.307 kb on - strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.340 kb on - strand at 19.584 kb on + strand, within GFF6711 at 19.584 kb on + strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.824 kb on + strand, within GFF6711 at 19.825 kb on - strand, within GFF6711 at 19.942 kb on + strand, within GFF6711 at 19.943 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 17,471 + GFF6709 0.25 -1.0 17,472 - GFF6709 0.25 +0.1 17,579 + GFF6709 0.33 +0.1 17,580 - GFF6709 0.33 -1.4 17,580 - GFF6709 0.33 -0.8 17,580 - GFF6709 0.33 -0.3 17,580 - GFF6709 0.33 -1.3 17,624 + GFF6709 0.37 +0.2 17,624 + GFF6709 0.37 -0.1 17,624 + GFF6709 0.37 -0.0 17,624 + GFF6709 0.37 -0.4 17,625 - GFF6709 0.37 +0.0 17,625 - GFF6709 0.37 -0.8 17,699 + GFF6709 0.43 -0.4 17,996 + GFF6709 0.66 +0.5 17,996 + GFF6709 0.66 -0.1 17,996 + GFF6709 0.66 -1.5 17,997 - GFF6709 0.66 +0.3 18,038 + GFF6709 0.70 +0.2 18,113 + GFF6709 0.76 -0.7 18,114 - GFF6709 0.76 +1.0 18,114 - GFF6709 0.76 +1.0 18,114 - GFF6709 0.76 +0.4 18,255 - GFF6709 0.87 -0.5 18,255 - GFF6709 0.87 +0.3 18,296 + +0.6 18,297 - -0.4 18,297 - -0.5 18,375 - -1.0 18,439 + +0.9 18,884 + GFF6710 0.49 -0.9 18,884 + GFF6710 0.49 +1.1 18,884 + GFF6710 0.49 +0.5 19,063 + GFF6710 0.68 -0.0 19,063 + GFF6710 0.68 -0.2 19,063 + GFF6710 0.68 +0.7 19,064 - GFF6710 0.68 +1.2 19,307 - +0.5 19,307 - +0.1 19,339 + -0.1 19,339 + -0.2 19,339 + +0.4 19,340 - +1.0 19,584 + GFF6711 0.23 -1.4 19,584 + GFF6711 0.23 +1.4 19,585 - GFF6711 0.23 -0.7 19,585 - GFF6711 0.23 +1.3 19,585 - GFF6711 0.23 -0.6 19,585 - GFF6711 0.23 +0.6 19,585 - GFF6711 0.23 +1.8 19,824 + GFF6711 0.52 -2.0 19,825 - GFF6711 0.52 -2.5 19,942 + GFF6711 0.66 +0.6 19,943 - GFF6711 0.66 -0.6 20,092 - GFF6711 0.84 -0.9 20,092 - GFF6711 0.84 -0.8
Or see this region's nucleotide sequence