Strain Fitness in Variovorax sp. SCN45 around GFF6418

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
91,959	+		GFF6417	0.23	-0.5
91,959	+		GFF6417	0.23	-1.6
91,959	+		GFF6417	0.23	-0.1
91,959	+		GFF6417	0.23	-1.1
91,959	+		GFF6417	0.23	+0.1
91,959	+		GFF6417	0.23	+0.4
91,959	+		GFF6417	0.23	-0.2
91,959	+		GFF6417	0.23	+1.2
91,959	+		GFF6417	0.23	-0.2
91,960	-		GFF6417	0.23	-0.4
91,960	-		GFF6417	0.23	+0.4
91,960	-		GFF6417	0.23	+1.3
91,968	+		GFF6417	0.24	-0.1
91,969	-		GFF6417	0.24	+0.4
92,154	+		GFF6417	0.42	+1.3
92,154	+		GFF6417	0.42	-0.8
92,154	+		GFF6417	0.42	+0.1
92,154	+		GFF6417	0.42	-0.1
92,154	+		GFF6417	0.42	-0.9
92,155	-		GFF6417	0.42	+0.4
92,155	-		GFF6417	0.42	-0.8
92,155	-		GFF6417	0.42	-0.9
92,155	-		GFF6417	0.42	-0.4
92,155	-		GFF6417	0.42	+0.0
92,155	-		GFF6417	0.42	-0.3
92,155	-		GFF6417	0.42	+1.2
92,155	-		GFF6417	0.42	-1.4
92,155	-		GFF6417	0.42	-1.1
92,155	-		GFF6417	0.42	+0.5
92,155	-		GFF6417	0.42	+0.9
92,155	-		GFF6417	0.42	-2.2
92,155	-		GFF6417	0.42	-0.0
92,241	+		GFF6417	0.51	+0.4
92,241	+		GFF6417	0.51	+0.8
92,241	+		GFF6417	0.51	+0.6
92,241	+		GFF6417	0.51	-1.6
92,241	+		GFF6417	0.51	+0.5
92,241	+		GFF6417	0.51	-2.6
92,241	+		GFF6417	0.51	+0.4
92,241	+		GFF6417	0.51	-0.4
92,241	+		GFF6417	0.51	-1.1
92,241	+		GFF6417	0.51	-0.2
92,241	+		GFF6417	0.51	-0.6
92,242	-		GFF6417	0.51	+1.8
92,242	-		GFF6417	0.51	+0.4
92,242	-		GFF6417	0.51	-1.3
92,242	-		GFF6417	0.51	-0.3
92,242	-		GFF6417	0.51	-0.7
92,242	-		GFF6417	0.51	-0.9
92,242	-		GFF6417	0.51	+0.2
92,242	-		GFF6417	0.51	+0.9
92,242	-		GFF6417	0.51	+0.7
92,242	-		GFF6417	0.51	+0.7
92,242	-		GFF6417	0.51	-0.5
92,242	-		GFF6417	0.51	+0.2
92,242	-		GFF6417	0.51	+0.8
92,242	-		GFF6417	0.51	-0.5
92,242	-		GFF6417	0.51	-0.8
92,242	-		GFF6417	0.51	+0.2
92,242	-		GFF6417	0.51	-1.1
92,242	-		GFF6417	0.51	-0.8
92,439	+		GFF6417	0.71	-0.5
92,439	+		GFF6417	0.71	+0.2
92,440	-		GFF6417	0.71	+2.2
92,440	-		GFF6417	0.71	+0.8
92,440	-		GFF6417	0.71	-0.1
92,440	-		GFF6417	0.71	+0.3
92,590	-		GFF6417	0.86	-0.3
92,590	-		GFF6417	0.86	+1.7
92,840	+		GFF6418	0.14	-0.5
92,840	+		GFF6418	0.14	-0.2
92,840	+		GFF6418	0.14	+0.1
92,840	+		GFF6418	0.14	-0.3
92,841	-		GFF6418	0.14	-1.3
92,841	-		GFF6418	0.14	-1.2
92,841	-		GFF6418	0.14	-0.6
92,841	-		GFF6418	0.14	-1.5
92,986	+		GFF6418	0.31	-1.0
92,987	-		GFF6418	0.32	-0.7
92,987	-		GFF6418	0.32	-0.6
92,987	-		GFF6418	0.32	-0.3
93,446	+		GFF6418	0.86	-0.7
93,447	-		GFF6418	0.86	-0.2
93,447	-		GFF6418	0.86	-3.1
93,467	+		GFF6418	0.89	+0.3
93,468	-		GFF6418	0.89	-1.1
93,468	-		GFF6418	0.89	-0.7
93,468	-		GFF6418	0.89	+0.8
93,468	-		GFF6418	0.89	+0.1
93,580	-				-0.5
93,618	-				-0.1
93,618	-				-0.2
93,680	+				-0.3
93,680	+				-0.2
93,680	+				+0.3
93,681	-				-0.4
93,681	-				+0.2
93,681	-				-0.3
93,741	+				-0.3
93,741	+				+0.7
93,741	+				+0.4
93,741	+				-0.7
93,741	+				+0.9
93,741	+				-0.1
93,741	+				-1.3
93,741	+				-1.7
93,741	+				-0.3
93,741	+				-1.1
93,741	+				-0.4
93,741	+				-1.0
93,741	+				+0.1
93,741	+				+0.2
93,741	+				-0.0
93,741	+				+0.8
93,741	+				+0.2
93,741	+				+0.6
93,741	+				+1.5
93,741	+				-0.8
93,741	+				-0.5
93,742	-				-0.4
93,742	-				+0.4
93,742	-				+0.5
93,742	-				-0.1
93,742	-				+1.9
93,742	-				+1.0
93,742	-				-0.1
93,742	-				-0.5
93,742	-				-1.1
93,742	-				+0.2
93,742	-				+1.8
93,742	-				+0.9
93,742	-				+0.3
93,742	-				+0.8
93,742	-				+0.1
93,742	-				+0.3
93,742	-				+0.4
93,742	-				-0.2
93,742	-				-1.8
93,823	-		GFF6419	0.11	+0.4
93,876	+		GFF6419	0.16	+0.5
93,877	-		GFF6419	0.16	-1.5
93,877	-		GFF6419	0.16	-0.4
93,877	-		GFF6419	0.16	-0.4
93,877	-		GFF6419	0.16	+0.4
93,877	-		GFF6419	0.16	-0.5
93,900	+		GFF6419	0.18	-0.1
93,900	+		GFF6419	0.18	-0.3
93,900	+		GFF6419	0.18	-1.0
93,901	-		GFF6419	0.18	+0.2
93,901	-		GFF6419	0.18	-0.7
93,901	-		GFF6419	0.18	-0.6
93,918	+		GFF6419	0.19	-0.1
93,918	+		GFF6419	0.19	+0.9
93,918	+		GFF6419	0.19	-0.1
93,918	+		GFF6419	0.19	+0.1
93,919	-		GFF6419	0.19	+0.4
93,919	-		GFF6419	0.19	+0.3
93,919	-		GFF6419	0.19	+0.6
93,919	-		GFF6419	0.19	-0.1
93,919	-		GFF6419	0.19	-0.3
93,919	-		GFF6419	0.19	+0.0
93,919	-		GFF6419	0.19	+1.0
93,954	+		GFF6419	0.22	+0.0
93,954	+		GFF6419	0.22	-0.1
93,954	+		GFF6419	0.22	-0.7
93,954	+		GFF6419	0.22	-1.5
93,954	+		GFF6419	0.22	+1.3
93,955	-		GFF6419	0.23	+0.5
93,955	-		GFF6419	0.23	+0.1
93,955	-		GFF6419	0.23	+0.9
93,955	-		GFF6419	0.23	+1.4
93,955	-		GFF6419	0.23	+0.1
93,996	+		GFF6419	0.26	-0.0
93,997	-		GFF6419	0.26	-0.6
94,062	+		GFF6419	0.32	-2.1
94,062	+		GFF6419	0.32	-0.4
94,062	+		GFF6419	0.32	-0.1
94,062	+		GFF6419	0.32	-0.1
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	+0.0
94,062	+		GFF6419	0.32	+0.6
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	+0.9
94,062	+		GFF6419	0.32	-1.2
94,062	+		GFF6419	0.32	+1.6
94,062	+		GFF6419	0.32	-1.3
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	-1.5
94,062	+		GFF6419	0.32	-0.4
94,063	-		GFF6419	0.32	-0.7
94,063	-		GFF6419	0.32	-1.3
94,063	-		GFF6419	0.32	-1.1
94,063	-		GFF6419	0.32	-0.7
94,063	-		GFF6419	0.32	+0.2
94,063	-		GFF6419	0.32	-0.5
94,063	-		GFF6419	0.32	+1.3
94,063	-		GFF6419	0.32	+0.3
94,063	-		GFF6419	0.32	-0.4
94,063	-		GFF6419	0.32	+0.7
94,063	-		GFF6419	0.32	+0.1
94,063	-		GFF6419	0.32	-0.5
94,063	-		GFF6419	0.32	+1.0
94,063	-		GFF6419	0.32	+0.2
94,224	+		GFF6419	0.45	-0.6
94,224	+		GFF6419	0.45	-0.2
94,224	+		GFF6419	0.45	-0.1
94,224	+		GFF6419	0.45	+0.2
94,224	+		GFF6419	0.45	+1.2
94,224	+		GFF6419	0.45	+0.3
94,224	+		GFF6419	0.45	-0.4
94,224	+		GFF6419	0.45	-1.7
94,224	+		GFF6419	0.45	-0.5
94,224	+		GFF6419	0.45	-0.2
94,225	-		GFF6419	0.45	-0.8
94,225	-		GFF6419	0.45	+0.6
94,225	-		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	+1.2
94,225	-		GFF6419	0.45	+0.1
94,225	-		GFF6419	0.45	-1.4
94,225	-		GFF6419	0.45	+0.6
94,225	-		GFF6419	0.45	+0.7
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	+0.7
94,225	-		GFF6419	0.45	-0.3
94,458	+		GFF6419	0.65	-1.0
94,459	-		GFF6419	0.65	+0.9
94,459	-		GFF6419	0.65	-0.7
94,459	-		GFF6419	0.65	+0.9
94,506	+		GFF6419	0.69	+2.2
94,506	+		GFF6419	0.69	-0.9
94,506	+		GFF6419	0.69	-0.4
94,506	+		GFF6419	0.69	-0.9
94,506	+		GFF6419	0.69	-0.5
94,506	+		GFF6419	0.69	-1.1
94,506	+		GFF6419	0.69	+1.6
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	-1.1
94,506	+		GFF6419	0.69	+0.1
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	+1.0
94,506	+		GFF6419	0.69	+2.2
94,506	+		GFF6419	0.69	+1.2
94,506	+		GFF6419	0.69	+0.6
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	-0.9
94,507	-		GFF6419	0.69	+0.9
94,507	-		GFF6419	0.69	-1.3
94,507	-		GFF6419	0.69	+0.7
94,507	-		GFF6419	0.69	+0.2
94,507	-		GFF6419	0.69	-0.9
94,507	-		GFF6419	0.69	-1.1
94,507	-		GFF6419	0.69	+0.9
94,507	-		GFF6419	0.69	+1.4
94,507	-		GFF6419	0.69	-0.4
94,507	-		GFF6419	0.69	-0.1
94,507	-		GFF6419	0.69	+0.1
94,507	-		GFF6419	0.69	-2.5
94,507	-		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	+0.6
94,507	-		GFF6419	0.69	-2.0
94,507	-		GFF6419	0.69	+1.0
94,524	+		GFF6419	0.71	+0.2
94,524	+		GFF6419	0.71	-0.8
94,525	-		GFF6419	0.71	-3.1
94,525	-		GFF6419	0.71	+1.3
94,525	-		GFF6419	0.71	+0.1
94,539	+		GFF6419	0.72	+0.2
94,539	+		GFF6419	0.72	+0.8
94,539	+		GFF6419	0.72	-0.4
94,539	+		GFF6419	0.72	-0.3
94,540	-		GFF6419	0.72	-0.2
94,540	-		GFF6419	0.72	-0.9
94,540	-		GFF6419	0.72	+0.2