Strain Fitness in Variovorax sp. SCN45 around GFF5893

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
111,864	+		GFF5892	0.62	+0.9
111,864	+		GFF5892	0.62	+1.1
111,879	+		GFF5892	0.65	-0.3
111,879	+		GFF5892	0.65	+0.0
111,880	-		GFF5892	0.65	+0.3
111,880	-		GFF5892	0.65	+1.4
111,880	-		GFF5892	0.65	+0.3
111,880	-		GFF5892	0.65	-0.6
111,880	-		GFF5892	0.65	+0.1
111,880	-		GFF5892	0.65	-1.5
111,880	-		GFF5892	0.65	-0.4
112,032	+		GFF5892	0.88	+0.5
112,032	+		GFF5892	0.88	-0.5
112,032	+		GFF5892	0.88	-0.1
112,032	+		GFF5892	0.88	+0.1
112,033	-		GFF5892	0.88	-0.9
112,217	+				+0.3
112,218	-				+1.1
112,727	+		GFF5893	0.56	-0.2
112,728	-		GFF5893	0.57	-2.4
112,728	-		GFF5893	0.57	-1.5
112,943	+		GFF5893	0.77	+1.4
112,943	+		GFF5893	0.77	-0.6
112,943	+		GFF5893	0.77	+0.9
112,944	-		GFF5893	0.77	-1.1
112,944	-		GFF5893	0.77	+0.1
112,944	-		GFF5893	0.77	+1.3
112,944	-		GFF5893	0.77	-1.9
112,944	-		GFF5893	0.77	+0.1
113,752	+				-0.5
113,753	-				-0.9
113,753	-				-1.2
113,753	-				-0.7
113,961	+		GFF5895	0.48	+0.4
113,961	+		GFF5895	0.48	+1.9
113,989	-		GFF5895	0.55	-1.2
113,989	-		GFF5895	0.55	-1.5
113,989	-		GFF5895	0.55	+2.1
113,989	-		GFF5895	0.55	-0.1
113,989	-		GFF5895	0.55	-0.1
114,063	+		GFF5895	0.74	-0.2
114,064	-		GFF5895	0.74	+0.5
114,170	+				+0.3
114,170	+				+0.7
114,170	+				-0.3
114,170	+				-0.5
114,170	+				+0.6
114,171	-				+0.5
114,171	-				+0.1
114,171	-				+0.3
114,171	-				-1.1
114,171	-				-1.8