Strain Fitness in Variovorax sp. SCN45 around GFF5834

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
8,984	+				+0.5
8,984	+				-0.8
8,984	+				+0.6
8,984	+				+0.7
8,985	-				+2.6
8,985	-				-0.1
8,985	-				+0.3
8,985	-				-2.0
8,985	-				-0.2
9,217	-		GFF5833	0.22	-1.2
9,244	-		GFF5833	0.25	+0.4
9,390	+		GFF5833	0.43	+1.5
9,671	+		GFF5833	0.78	-0.2
9,883	+				-2.5
9,884	-				-1.5
9,884	-				-0.6
9,884	-				-0.0
10,117	+		GFF5834	0.12	+2.5
10,118	-		GFF5834	0.12	+0.1
10,118	-		GFF5834	0.12	+0.3
10,144	+		GFF5834	0.14	+0.9
10,144	+		GFF5834	0.14	+0.5
10,145	-		GFF5834	0.14	-0.5
10,145	-		GFF5834	0.14	+0.2
10,145	-		GFF5834	0.14	-0.6
10,295	-		GFF5834	0.23	+0.2
10,361	+		GFF5834	0.27	-0.0
10,361	+		GFF5834	0.27	-0.5
10,362	-		GFF5834	0.27	-0.5
10,362	-		GFF5834	0.27	+4.1
10,362	-		GFF5834	0.27	-0.3
10,362	-		GFF5834	0.27	+0.5
10,362	-		GFF5834	0.27	-0.4
10,517	+		GFF5834	0.37	-0.1
10,517	+		GFF5834	0.37	-0.1
10,518	-		GFF5834	0.37	-0.7
10,518	-		GFF5834	0.37	+0.4
10,518	-		GFF5834	0.37	+1.1
10,618	+		GFF5834	0.43	-0.1
10,619	-		GFF5834	0.43	+0.8
10,828	+		GFF5834	0.56	+0.2
10,829	-		GFF5834	0.56	+0.8
10,829	-		GFF5834	0.56	+0.5
10,927	+		GFF5834	0.63	+0.1
10,927	+		GFF5834	0.63	+1.2
10,927	+		GFF5834	0.63	-0.7
10,927	+		GFF5834	0.63	+1.6
10,928	-		GFF5834	0.63	-0.2
10,928	-		GFF5834	0.63	-0.1
10,928	-		GFF5834	0.63	-1.6
10,928	-		GFF5834	0.63	-0.0
10,928	-		GFF5834	0.63	+0.9
10,975	+		GFF5834	0.66	+1.7
10,975	+		GFF5834	0.66	-0.2
10,975	+		GFF5834	0.66	-0.5
10,975	+		GFF5834	0.66	+0.1
10,976	-		GFF5834	0.66	+1.5
10,976	-		GFF5834	0.66	+2.8
10,976	-		GFF5834	0.66	+0.1
10,976	-		GFF5834	0.66	+1.0
11,020	+		GFF5834	0.68	+0.5
11,021	-		GFF5834	0.68	+0.7
11,219	-		GFF5834	0.81	-0.1
11,242	+		GFF5834	0.82	+0.7
11,242	+		GFF5834	0.82	+1.2
11,242	+		GFF5834	0.82	+0.2
11,242	+		GFF5834	0.82	-0.7
11,242	+		GFF5834	0.82	-0.5
11,243	-		GFF5834	0.82	+0.1
11,243	-		GFF5834	0.82	-0.5
11,243	-		GFF5834	0.82	-0.1
11,243	-		GFF5834	0.82	-1.0
11,243	-		GFF5834	0.82	+0.1
11,243	-		GFF5834	0.82	-0.8
11,243	-		GFF5834	0.82	+0.7
11,243	-		GFF5834	0.82	+1.1
11,339	-		GFF5834	0.88	+0.4
11,339	-		GFF5834	0.88	-0.2
11,339	-		GFF5834	0.88	-0.2