Strain Fitness in Variovorax sp. SCN45 around GFF5538

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5537 and GFF5538 are separated by 11 nucleotidesGFF5538 and GFF5539 are separated by 6 nucleotidesGFF5539 and GFF5540 are separated by 114 nucleotides GFF5537 - Cell division inhibitor SulA, at 165,555 to 167,051 GFF5537 GFF5538 - ATP-dependent DNA helicase RecG (EC 3.6.4.12), at 167,063 to 169,195 GFF5538 GFF5539 - Transporter, LysE family, at 169,202 to 169,834 GFF5539 GFF5540 - FIG01201438: hypothetical protein, at 169,949 to 170,389 GFF5540 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2 3at 166.470 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.473 kb on + strand, within GFF5537at 166.474 kb on - strand, within GFF5537at 166.474 kb on - strand, within GFF5537at 167.049 kb on + strandat 167.050 kb on - strandat 167.050 kb on - strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.157 kb on + strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.158 kb on - strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.210 kb on + strandat 167.211 kb on - strandat 167.211 kb on - strandat 167.225 kb on + strandat 167.226 kb on - strandat 167.226 kb on - strandat 167.318 kb on + strand, within GFF5538at 167.318 kb on + strand, within GFF5538at 167.319 kb on - strand, within GFF5538at 167.394 kb on - strand, within GFF5538at 167.537 kb on + strand, within GFF5538at 167.537 kb on + strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.538 kb on - strand, within GFF5538at 167.684 kb on + strand, within GFF5538at 167.685 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.419 kb on + strand, within GFF5538at 168.419 kb on + strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.557 kb on + strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.761 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 169.181 kb on + strandat 169.181 kb on + strandat 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.401 kb on + strand, within GFF5539at 169.590 kb on + strand, within GFF5539at 169.590 kb on + strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.818 kb on + strandat 169.818 kb on + strandat 169.819 kb on - strandat 169.819 kb on - strandat 169.819 kb on - strandat 169.839 kb on + strandat 169.839 kb on + strandat 169.839 kb on + strandat 169.871 kb on + strandat 169.871 kb on + strandat 169.872 kb on - strandat 169.874 kb on - strandat 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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166,470 + GFF5537 0.61 -0.2
166,473 + GFF5537 0.61 -0.3
166,473 + GFF5537 0.61 +0.2
166,473 + GFF5537 0.61 -0.8
166,473 + GFF5537 0.61 -0.0
166,473 + GFF5537 0.61 +0.9
166,473 + GFF5537 0.61 -1.0
166,473 + GFF5537 0.61 +0.0
166,473 + GFF5537 0.61 +0.4
166,473 + GFF5537 0.61 +1.2
166,474 - GFF5537 0.61 -0.9
166,474 - GFF5537 0.61 -0.2
167,049 + -0.6
167,050 - -0.0
167,050 - -2.3
167,157 + -0.5
167,157 + -0.1
167,157 + -1.1
167,157 + -2.0
167,158 - -0.1
167,158 - +0.3
167,158 - -1.1
167,158 - -0.5
167,210 + -1.9
167,210 + -0.3
167,210 + -0.0
167,210 + +0.5
167,211 - -0.3
167,211 - -0.5
167,225 + +0.8
167,226 - +1.1
167,226 - +0.5
167,318 + GFF5538 0.12 +0.2
167,318 + GFF5538 0.12 +0.2
167,319 - GFF5538 0.12 +0.9
167,394 - GFF5538 0.16 +1.5
167,537 + GFF5538 0.22 -1.8
167,537 + GFF5538 0.22 -1.7
167,538 - GFF5538 0.22 -1.5
167,538 - GFF5538 0.22 -1.0
167,538 - GFF5538 0.22 +1.0
167,684 + GFF5538 0.29 -1.2
167,685 - GFF5538 0.29 +0.6
168,386 - GFF5538 0.62 -0.7
168,386 - GFF5538 0.62 +0.0
168,386 - GFF5538 0.62 -1.2
168,386 - GFF5538 0.62 -0.5
168,386 - GFF5538 0.62 -0.1
168,416 + GFF5538 0.63 -0.4
168,416 + GFF5538 0.63 -0.5
168,416 + GFF5538 0.63 +0.2
168,416 + GFF5538 0.63 -0.4
168,416 + GFF5538 0.63 -1.1
168,416 + GFF5538 0.63 -1.7
168,416 + GFF5538 0.63 -0.0
168,416 + GFF5538 0.63 +0.8
168,416 + GFF5538 0.63 +0.6
168,416 + GFF5538 0.63 -2.1
168,417 - GFF5538 0.63 -0.9
168,417 - GFF5538 0.63 -0.4
168,417 - GFF5538 0.63 -0.6
168,417 - GFF5538 0.63 -0.6
168,417 - GFF5538 0.63 -0.7
168,417 - GFF5538 0.63 +1.2
168,417 - GFF5538 0.63 -0.4
168,419 + GFF5538 0.64 +0.7
168,419 + GFF5538 0.64 -0.9
168,420 - GFF5538 0.64 -1.3
168,420 - GFF5538 0.64 -1.0
168,420 - GFF5538 0.64 +0.1
168,557 + GFF5538 0.70 -0.9
168,558 - GFF5538 0.70 -0.2
168,558 - GFF5538 0.70 -0.6
168,558 - GFF5538 0.70 -1.2
168,761 + GFF5538 0.80 -0.8
168,893 + GFF5538 0.86 -1.3
168,893 + GFF5538 0.86 -1.0
168,893 + GFF5538 0.86 -0.9
168,893 + GFF5538 0.86 -0.8
168,893 + GFF5538 0.86 -0.4
169,181 + -0.8
169,181 + -1.0
169,335 + GFF5539 0.21 -0.4
169,335 + GFF5539 0.21 +1.4
169,335 + GFF5539 0.21 -0.6
169,335 + GFF5539 0.21 -1.6
169,335 + GFF5539 0.21 -0.3
169,335 + GFF5539 0.21 +0.2
169,336 - GFF5539 0.21 +0.0
169,336 - GFF5539 0.21 +2.2
169,336 - GFF5539 0.21 +0.3
169,336 - GFF5539 0.21 -0.6
169,336 - GFF5539 0.21 +0.3
169,389 + GFF5539 0.30 -0.4
169,389 + GFF5539 0.30 -0.2
169,389 + GFF5539 0.30 +0.3
169,389 + GFF5539 0.30 +2.8
169,389 + GFF5539 0.30 -0.8
169,389 + GFF5539 0.30 -0.5
169,389 + GFF5539 0.30 +0.0
169,390 - GFF5539 0.30 -1.6
169,390 - GFF5539 0.30 -0.1
169,390 - GFF5539 0.30 +0.8
169,390 - GFF5539 0.30 +0.1
169,390 - GFF5539 0.30 +1.6
169,401 + GFF5539 0.31 -1.5
169,590 + GFF5539 0.61 +1.7
169,590 + GFF5539 0.61 -0.6
169,591 - GFF5539 0.61 +0.9
169,591 - GFF5539 0.61 -0.4
169,591 - GFF5539 0.61 -0.0
169,605 + GFF5539 0.64 +0.4
169,605 + GFF5539 0.64 +0.0
169,605 + GFF5539 0.64 -0.4
169,605 + GFF5539 0.64 +0.4
169,605 + GFF5539 0.64 +1.5
169,605 + GFF5539 0.64 +1.0
169,605 + GFF5539 0.64 -0.0
169,605 + GFF5539 0.64 +0.2
169,605 + GFF5539 0.64 -0.3
169,605 + GFF5539 0.64 -1.1
169,605 + GFF5539 0.64 -0.6
169,605 + GFF5539 0.64 -1.7
169,606 - GFF5539 0.64 +1.4
169,606 - GFF5539 0.64 -1.1
169,606 - GFF5539 0.64 +0.3
169,606 - GFF5539 0.64 -0.6
169,606 - GFF5539 0.64 -1.0
169,818 + -0.4
169,818 + -0.1
169,819 - -1.0
169,819 - +1.2
169,819 - -0.3
169,839 + +0.3
169,839 + +0.1
169,839 + -1.1
169,871 + -0.1
169,871 + -0.1
169,872 - -0.1
169,874 - -0.6
170,049 - GFF5540 0.23 -1.0
170,049 - GFF5540 0.23 +0.9
170,049 - GFF5540 0.23 -0.0
170,049 - GFF5540 0.23 -0.9
170,049 - GFF5540 0.23 -0.8

Or see this region's nucleotide sequence