Strain Fitness in Variovorax sp. SCN45 around GFF5157

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
8,635	+		GFF5156	0.29	-1.3
8,689	+		GFF5156	0.33	-0.5
8,689	+		GFF5156	0.33	-1.9
8,690	-		GFF5156	0.33	-2.1
8,812	+		GFF5156	0.42	-2.4
8,812	+		GFF5156	0.42	-2.2
8,812	+		GFF5156	0.42	-2.5
8,813	-		GFF5156	0.42	-1.8
8,813	-		GFF5156	0.42	-1.4
8,813	-		GFF5156	0.42	-1.0
8,813	-		GFF5156	0.42	-2.5
8,854	+		GFF5156	0.45	-2.6
8,855	-		GFF5156	0.45	-1.6
8,875	+		GFF5156	0.46	-0.9
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	-1.7
8,875	+		GFF5156	0.46	-0.6
8,875	+		GFF5156	0.46	-0.9
8,875	+		GFF5156	0.46	+1.0
8,875	+		GFF5156	0.46	-3.0
8,875	+		GFF5156	0.46	+0.7
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	-0.8
8,875	+		GFF5156	0.46	-1.6
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	+0.4
8,875	+		GFF5156	0.46	-0.2
8,875	+		GFF5156	0.46	-2.6
8,875	+		GFF5156	0.46	-0.9
8,875	+		GFF5156	0.46	-1.7
8,876	-		GFF5156	0.46	-0.8
8,876	-		GFF5156	0.46	-1.5
8,876	-		GFF5156	0.46	-1.5
8,876	-		GFF5156	0.46	+0.2
8,876	-		GFF5156	0.46	-1.9
8,876	-		GFF5156	0.46	-1.1
8,876	-		GFF5156	0.46	-2.0
8,876	-		GFF5156	0.46	-0.9
8,876	-		GFF5156	0.46	+1.3
8,876	-		GFF5156	0.46	-1.5
8,876	-		GFF5156	0.46	-1.3
8,876	-		GFF5156	0.46	-1.3
8,876	-		GFF5156	0.46	-0.4
8,876	-		GFF5156	0.46	-2.4
8,876	-		GFF5156	0.46	-1.5
8,876	-		GFF5156	0.46	-1.3
8,876	-		GFF5156	0.46	-1.2
8,876	-		GFF5156	0.46	-0.7
8,876	-		GFF5156	0.46	-1.3
8,876	-		GFF5156	0.46	+0.0
8,876	-		GFF5156	0.46	-2.2
8,876	-		GFF5156	0.46	-1.2
8,876	-		GFF5156	0.46	+0.4
8,968	+		GFF5156	0.53	-2.0
8,977	+		GFF5156	0.54	+0.0
8,977	+		GFF5156	0.54	-1.7
8,977	+		GFF5156	0.54	+0.4
8,977	+		GFF5156	0.54	-0.9
8,977	+		GFF5156	0.54	-0.9
8,977	+		GFF5156	0.54	-2.4
8,977	+		GFF5156	0.54	-2.1
8,977	+		GFF5156	0.54	-0.8
8,977	+		GFF5156	0.54	-1.3
8,977	+		GFF5156	0.54	-1.1
8,977	+		GFF5156	0.54	-0.6
8,978	-		GFF5156	0.54	-3.6
8,978	-		GFF5156	0.54	+0.0
8,978	-		GFF5156	0.54	-1.5
8,978	-		GFF5156	0.54	-0.6
8,978	-		GFF5156	0.54	-1.7
8,978	-		GFF5156	0.54	-2.8
8,978	-		GFF5156	0.54	+0.4
8,995	+		GFF5156	0.55	-1.0
8,995	+		GFF5156	0.55	+1.0
8,996	-		GFF5156	0.55	-2.1
8,996	-		GFF5156	0.55	-1.3
8,996	-		GFF5156	0.55	-0.8
8,996	-		GFF5156	0.55	-2.6
8,996	-		GFF5156	0.55	+0.0
8,996	-		GFF5156	0.55	-0.8
9,022	+		GFF5156	0.57	-1.8
9,022	+		GFF5156	0.57	+0.7
9,022	+		GFF5156	0.57	-3.0
9,022	+		GFF5156	0.57	-2.5
9,022	+		GFF5156	0.57	-1.4
9,023	-		GFF5156	0.57	+1.2
9,023	-		GFF5156	0.57	-1.2
9,023	-		GFF5156	0.57	-1.9
9,023	-		GFF5156	0.57	-0.9
9,023	-		GFF5156	0.57	+1.5
9,023	-		GFF5156	0.57	+1.7
9,023	-		GFF5156	0.57	-0.3
9,074	-		GFF5156	0.61	-1.6
9,074	-		GFF5156	0.61	-1.6
9,217	+		GFF5156	0.71	-0.7
9,217	+		GFF5156	0.71	-0.9
9,218	-		GFF5156	0.71	-1.5
9,218	-		GFF5156	0.71	+0.0
9,218	-		GFF5156	0.71	-1.9
9,218	-		GFF5156	0.71	-2.3
9,382	+		GFF5156	0.83	+0.4
9,382	+		GFF5156	0.83	-1.5
9,383	-		GFF5156	0.83	-2.1
9,383	-		GFF5156	0.83	-2.1
9,383	-		GFF5156	0.83	-0.9
9,383	-		GFF5156	0.83	+0.1
9,383	-		GFF5156	0.83	-0.8
9,383	-		GFF5156	0.83	-1.1
9,383	-		GFF5156	0.83	-1.7
9,385	+		GFF5156	0.83	+2.0
9,385	+		GFF5156	0.83	-2.3
9,385	+		GFF5156	0.83	+0.2
9,385	+		GFF5156	0.83	-1.9
9,385	+		GFF5156	0.83	-1.3
9,385	+		GFF5156	0.83	+1.0
9,385	+		GFF5156	0.83	-3.0
9,385	+		GFF5156	0.83	-2.4
9,385	+		GFF5156	0.83	-1.9
9,386	-		GFF5156	0.83	-1.8
9,386	-		GFF5156	0.83	-2.1
9,386	-		GFF5156	0.83	-0.5
9,386	-		GFF5156	0.83	-1.3
9,386	-		GFF5156	0.83	-2.1
9,386	-		GFF5156	0.83	-1.9
9,386	-		GFF5156	0.83	-1.5
9,386	-		GFF5156	0.83	-1.5
9,386	-		GFF5156	0.83	-1.5
9,386	-		GFF5156	0.83	-3.0
9,386	-		GFF5156	0.83	+1.6
9,386	-		GFF5156	0.83	+2.0
9,386	-		GFF5156	0.83	-1.1
9,386	-		GFF5156	0.83	-1.9
9,386	-		GFF5156	0.83	-0.4
9,386	-		GFF5156	0.83	+0.4
9,386	-		GFF5156	0.83	-0.6
9,617	+				+0.3
9,617	+				+0.0
9,617	+				-0.2
9,617	+				-0.5
9,617	+				+0.2
9,618	-				-0.6
9,618	-				-0.5
9,618	-				+0.1
9,618	-				+2.0
9,678	+				+0.3
9,678	+				-0.4
9,678	+				+1.0
9,678	+				+0.6
9,679	-				-1.9
9,679	-				-1.0
9,679	-				+0.6
9,679	-				+0.4
9,679	-				-0.7
9,679	-				-0.4
9,885	+		GFF5157	0.14	-1.0
9,897	+		GFF5157	0.15	-1.2
9,897	+		GFF5157	0.15	-0.3
9,897	+		GFF5157	0.15	-0.6
9,897	+		GFF5157	0.15	-0.4
9,897	+		GFF5157	0.15	+1.6
9,897	+		GFF5157	0.15	+1.0
9,897	+		GFF5157	0.15	+0.2
9,897	+		GFF5157	0.15	-0.7
9,897	+		GFF5157	0.15	-0.6
9,897	+		GFF5157	0.15	+0.0
9,897	+		GFF5157	0.15	-0.1
9,897	+		GFF5157	0.15	+0.1
9,897	+		GFF5157	0.15	+0.2
9,897	+		GFF5157	0.15	-1.0
9,897	+		GFF5157	0.15	+0.5
9,897	+		GFF5157	0.15	-0.7
9,897	+		GFF5157	0.15	-1.7
9,897	+		GFF5157	0.15	-0.2
9,897	+		GFF5157	0.15	+0.4
9,897	+		GFF5157	0.15	+0.0
9,897	+		GFF5157	0.15	+1.0
9,898	-		GFF5157	0.15	+0.8
9,898	-		GFF5157	0.15	-0.8
9,898	-		GFF5157	0.15	-0.5
9,898	-		GFF5157	0.15	-0.0
9,898	-		GFF5157	0.15	+0.1
9,898	-		GFF5157	0.15	+0.1
9,898	-		GFF5157	0.15	+0.7
9,898	-		GFF5157	0.15	-0.1
9,898	-		GFF5157	0.15	-1.3
9,898	-		GFF5157	0.15	+0.7
9,898	-		GFF5157	0.15	+0.4
9,898	-		GFF5157	0.15	-0.8
9,898	-		GFF5157	0.15	+1.3
9,898	-		GFF5157	0.15	+0.3
9,898	-		GFF5157	0.15	-0.9
10,104	+		GFF5157	0.26	-1.8
10,104	+		GFF5157	0.26	+0.8
10,359	+		GFF5157	0.40	+0.0
10,359	+		GFF5157	0.40	-0.6
10,359	+		GFF5157	0.40	+0.7
10,359	+		GFF5157	0.40	+0.2
10,360	-		GFF5157	0.40	+0.4
10,360	-		GFF5157	0.40	-0.7
10,479	+		GFF5157	0.46	-0.1
10,479	+		GFF5157	0.46	+0.5
10,479	+		GFF5157	0.46	+1.4
10,480	-		GFF5157	0.46	+0.4
10,480	-		GFF5157	0.46	-0.2
10,480	-		GFF5157	0.46	+0.3
10,480	-		GFF5157	0.46	+1.3
10,480	-		GFF5157	0.46	-0.3
10,539	+		GFF5157	0.49	-1.0
10,540	-		GFF5157	0.50	+0.0
10,540	-		GFF5157	0.50	-0.6
10,540	-		GFF5157	0.50	+0.0
10,540	-		GFF5157	0.50	+0.4
10,540	-		GFF5157	0.50	-1.0
10,540	-		GFF5157	0.50	-0.2
10,540	-		GFF5157	0.50	-0.5
10,614	+		GFF5157	0.54	-0.8
10,615	-		GFF5157	0.54	-0.2
10,620	+		GFF5157	0.54	+0.1
10,620	+		GFF5157	0.54	+1.5
10,620	+		GFF5157	0.54	-0.4
10,621	-		GFF5157	0.54	+0.3
10,621	-		GFF5157	0.54	-1.1
10,621	-		GFF5157	0.54	-0.1
10,698	+		GFF5157	0.58	+0.6
10,699	-		GFF5157	0.58	+0.0
10,699	-		GFF5157	0.58	-0.7
10,746	+		GFF5157	0.61	+0.0
10,747	-		GFF5157	0.61	+0.2
10,747	-		GFF5157	0.61	+1.6
10,747	-		GFF5157	0.61	-0.6
10,789	-		GFF5157	0.63	+0.4
10,872	+		GFF5157	0.67	+0.4
10,872	+		GFF5157	0.67	+0.0
10,872	+		GFF5157	0.67	-0.5
10,872	+		GFF5157	0.67	-0.6
10,872	+		GFF5157	0.67	+0.0
10,873	-		GFF5157	0.67	-1.0
10,873	-		GFF5157	0.67	-0.4
10,873	-		GFF5157	0.67	-0.9
10,873	-		GFF5157	0.67	-0.6
10,873	-		GFF5157	0.67	-0.9
10,873	-		GFF5157	0.67	+0.1
10,873	-		GFF5157	0.67	-0.2
10,962	+		GFF5157	0.72	-0.8
10,962	+		GFF5157	0.72	+0.6
10,963	-		GFF5157	0.72	+0.4
10,963	-		GFF5157	0.72	-0.7
10,963	-		GFF5157	0.72	-0.0
10,963	-		GFF5157	0.72	-0.4
11,115	+		GFF5157	0.80	+0.4
11,115	+		GFF5157	0.80	-0.5
11,115	+		GFF5157	0.80	-1.5
11,116	-		GFF5157	0.80	+0.7
11,116	-		GFF5157	0.80	-0.4
11,116	-		GFF5157	0.80	+0.7
11,202	+		GFF5157	0.85	-0.6
11,202	+		GFF5157	0.85	+1.3
11,202	+		GFF5157	0.85	-1.1
11,202	+		GFF5157	0.85	-1.0
11,202	+		GFF5157	0.85	+0.4
11,202	+		GFF5157	0.85	-1.5
11,202	+		GFF5157	0.85	-0.9
11,202	+		GFF5157	0.85	-1.6
11,203	-		GFF5157	0.85	-0.5
11,203	-		GFF5157	0.85	+0.2
11,203	-		GFF5157	0.85	-0.7
11,203	-		GFF5157	0.85	-1.5
11,203	-		GFF5157	0.85	-1.7
11,355	+				+0.8
11,355	+				-0.7
11,355	+				-0.8
11,355	+				-0.1
11,355	+				-0.3
11,356	-				+0.0
11,356	-				-1.0
11,567	+		GFF5158	0.11	-1.0
11,567	+		GFF5158	0.11	-2.5
11,567	+		GFF5158	0.11	-1.3
11,568	-		GFF5158	0.11	-4.0
11,568	-		GFF5158	0.11	-3.4
12,201	+		GFF5158	0.88	-0.8
12,201	+		GFF5158	0.88	-3.0
12,202	-		GFF5158	0.88	-2.9
12,202	-		GFF5158	0.88	-3.4
12,202	-		GFF5158	0.88	-3.8
12,202	-		GFF5158	0.88	-1.0
12,292	+				+0.3
12,292	+				+0.5
12,292	+				-0.3
12,292	+				-0.1
12,292	+				-1.8
12,292	+				-1.1
12,293	-				+1.5