Strain Fitness in Variovorax sp. SCN45 around GFF4917

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
9,378	+				+0.9
9,378	+				+0.7
9,378	+				-0.3
9,378	+				-0.2
9,378	+				+0.9
9,378	+				+0.4
9,379	-				-0.1
9,379	-				-0.9
9,379	-				-0.4
9,379	-				+0.6
9,379	-				-0.6
9,379	-				-0.0
9,379	-				-0.2
9,483	+				-0.4
9,483	+				-0.4
9,483	+				-0.5
9,483	+				-0.1
9,484	-				-0.4
9,484	-				-0.9
9,484	-				-0.8
9,529	+				-1.6
9,529	+				-1.5
9,529	+				-0.1
9,530	-				-0.3
9,588	+		GFF4916	0.14	-0.5
9,743	+		GFF4916	0.40	+0.2
9,744	-		GFF4916	0.40	-1.2
9,985	-		GFF4916	0.80	-0.6
9,985	-		GFF4916	0.80	+0.5
9,985	-		GFF4916	0.80	-0.5
11,096	-		GFF4917	0.54	+0.3
11,096	-		GFF4917	0.54	-0.7
11,096	-		GFF4917	0.54	+1.4
11,096	-		GFF4917	0.54	-0.6
11,313	+		GFF4917	0.66	+0.3
11,313	+		GFF4917	0.66	-0.3
11,314	-		GFF4917	0.66	-0.7
11,314	-		GFF4917	0.66	-0.5
11,314	-		GFF4917	0.66	+0.7
11,383	+		GFF4917	0.70	+0.7
11,383	+		GFF4917	0.70	+1.4
11,383	+		GFF4917	0.70	+2.1
11,384	-		GFF4917	0.70	+1.5
11,384	-		GFF4917	0.70	+0.5
11,384	-		GFF4917	0.70	-0.3
11,384	-		GFF4917	0.70	-0.1
11,384	-		GFF4917	0.70	-0.2
11,384	-		GFF4917	0.70	+0.4
11,384	-		GFF4917	0.70	+2.1
11,384	-		GFF4917	0.70	-0.7
12,065	+		GFF4918	0.25	-1.2
12,144	+		GFF4918	0.38	-0.8
12,144	+		GFF4918	0.38	+0.0
12,144	+		GFF4918	0.38	+0.4
12,144	+		GFF4918	0.38	-0.1
12,144	+		GFF4918	0.38	-0.1
12,144	+		GFF4918	0.38	+0.7
12,145	-		GFF4918	0.38	-0.1
12,145	-		GFF4918	0.38	-0.5
12,145	-		GFF4918	0.38	+0.1
12,300	+		GFF4918	0.64	-0.5
12,301	-		GFF4918	0.64	+0.4
12,301	-		GFF4918	0.64	-1.1
12,301	-		GFF4918	0.64	-0.5
12,301	-		GFF4918	0.64	+1.0
12,301	-		GFF4918	0.64	+0.5
12,414	+		GFF4918	0.82	-0.1
12,414	+		GFF4918	0.82	-0.5
12,414	+		GFF4918	0.82	-1.6
12,415	-		GFF4918	0.83	-0.1
12,415	-		GFF4918	0.83	-0.3
12,415	-		GFF4918	0.83	+0.4
12,415	-		GFF4918	0.83	+0.0
12,415	-		GFF4918	0.83	-1.2
12,453	+		GFF4918	0.89	-0.8
12,453	+		GFF4918	0.89	-0.1
12,454	-		GFF4918	0.89	+0.0
12,454	-		GFF4918	0.89	+0.3
12,454	-		GFF4918	0.89	-0.2
12,511	+				+0.6
12,511	+				-1.5
12,511	+				+1.9
12,511	+				-0.6
12,511	+				+0.4
12,512	-				-0.3
12,512	-				-0.7
12,512	-				-0.7
12,525	-				+0.2
12,525	-				-0.2
12,587	+				-0.2
12,587	+				-1.2
12,620	-				-0.3
12,720	+				-0.6