Strain Fitness in Variovorax sp. SCN45 around GFF4674

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
30,906	+				+0.2
30,906	+				+0.7
30,906	+				+0.7
30,907	-				-0.9
30,907	-				+0.2
30,907	-				+0.9
30,990	+				-0.2
30,990	+				+0.1
30,991	-				-0.0
30,991	-				+0.4
30,991	-				-1.5
31,005	+				-0.5
31,005	+				+0.1
31,005	+				-0.4
31,005	+				-0.5
31,005	+				-1.0
31,006	-				-1.3
31,006	-				+0.2
31,006	-				-0.9
31,006	-				-0.3
31,006	-				-1.0
31,163	+		GFF4673	0.30	-0.9
31,263	+		GFF4673	0.43	+0.4
31,263	+		GFF4673	0.43	-0.4
31,263	+		GFF4673	0.43	-0.1
31,263	+		GFF4673	0.43	-0.5
31,263	+		GFF4673	0.43	-0.3
31,263	+		GFF4673	0.43	+0.1
31,264	-		GFF4673	0.43	-0.3
31,264	-		GFF4673	0.43	-1.6
31,264	-		GFF4673	0.43	+0.7
31,264	-		GFF4673	0.43	-0.8
31,264	-		GFF4673	0.43	-0.7
31,264	-		GFF4673	0.43	+0.7
31,276	-		GFF4673	0.45	-0.6
31,276	-		GFF4673	0.45	-0.6
31,276	-		GFF4673	0.45	+0.1
31,467	+		GFF4673	0.70	+0.2
31,467	+		GFF4673	0.70	+0.7
31,467	+		GFF4673	0.70	-0.3
31,468	-		GFF4673	0.70	+0.2
31,468	-		GFF4673	0.70	-1.0
31,468	-		GFF4673	0.70	-0.3
31,468	-		GFF4673	0.70	-0.1
31,468	-		GFF4673	0.70	+0.5
31,563	+		GFF4673	0.82	+0.1
31,563	+		GFF4673	0.82	-1.0
31,563	+		GFF4673	0.82	-0.2
31,563	+		GFF4673	0.82	+0.2
31,563	+		GFF4673	0.82	+0.1
31,563	+		GFF4673	0.82	-0.5
31,563	+		GFF4673	0.82	+0.1
31,564	-		GFF4673	0.82	+0.1
31,564	-		GFF4673	0.82	-0.3
31,564	-		GFF4673	0.82	-1.5
31,572	+		GFF4673	0.83	-0.5
31,573	-		GFF4673	0.83	-0.7
31,573	-		GFF4673	0.83	-0.5
31,573	-		GFF4673	0.83	-0.2
31,573	-		GFF4673	0.83	-0.4
31,720	+				-0.7
31,720	+				-0.2
31,720	+				+0.1
31,721	-				-1.3
31,772	+				-1.1
31,772	+				+0.7
31,772	+				+0.1
31,772	+				-0.1
31,772	+				-0.0
31,772	+				-0.3
31,772	+				+0.2
31,772	+				+0.2
31,772	+				-0.3
31,772	+				-0.3
31,772	+				+1.4
31,773	-				+1.3
31,773	-				-0.1
31,773	-				-0.8
31,773	-				-0.9
31,773	-				+0.4
31,773	-				-0.3
31,773	-				+0.2
31,773	-				-1.2
31,773	-				+0.7
31,773	-				-0.9
31,773	-				-0.1
31,773	-				-2.7
31,773	-				-0.2
31,773	-				+0.8
31,773	-				+1.1
31,773	-				-0.3
31,773	-				-1.3
31,773	-				+0.5
31,793	+				-0.1
31,793	+				-1.0
31,793	+				+0.5
31,794	-				+0.0
31,794	-				+0.7
32,033	+		GFF4674	0.14	+0.5
32,033	+		GFF4674	0.14	+0.1
32,034	-		GFF4674	0.14	-0.4
32,034	-		GFF4674	0.14	-1.3
32,034	-		GFF4674	0.14	+0.2
32,237	+		GFF4674	0.29	-0.3
32,237	+		GFF4674	0.29	-1.6
32,237	+		GFF4674	0.29	+0.5
32,237	+		GFF4674	0.29	-1.6
32,237	+		GFF4674	0.29	-0.8
32,238	-		GFF4674	0.29	-1.0
32,783	+		GFF4674	0.70	-2.4
32,784	-		GFF4674	0.70	-1.1
32,784	-		GFF4674	0.70	-1.2
32,888	+		GFF4674	0.77	-0.4
32,888	+		GFF4674	0.77	-0.5
32,888	+		GFF4674	0.77	+0.1
32,888	+		GFF4674	0.77	-0.3
32,888	+		GFF4674	0.77	+0.2
32,888	+		GFF4674	0.77	+0.1
32,888	+		GFF4674	0.77	+0.4
32,888	+		GFF4674	0.77	+1.4
32,889	-		GFF4674	0.77	-0.8
33,011	+		GFF4674	0.87	+0.7
33,011	+		GFF4674	0.87	-0.2
33,011	+		GFF4674	0.87	-0.4
33,012	-		GFF4674	0.87	+1.9
33,012	-		GFF4674	0.87	+0.1
33,107	+				-0.9
33,107	+				-0.1
33,107	+				-0.4
33,108	-				+0.0
33,108	-				+0.1
33,108	-				-1.4
33,108	-				-1.1
33,108	-				+0.3
33,108	-				-0.5
33,108	-				+0.7
33,108	-				+1.7
33,108	-				-0.7
33,167	+				-0.2
33,167	+				-1.3
33,167	+				-1.3
33,167	+				-0.5
33,167	+				-0.3
33,167	+				-0.5
33,168	-				+0.6
33,168	-				+0.3
33,168	-				-1.3
33,168	-				-0.4
33,168	-				+1.7
33,188	+				+1.9
33,188	+				+0.1
33,188	+				-2.1
33,188	+				-1.8
33,189	-				+2.5
33,189	-				-0.3
33,297	+		GFF4675	0.18	-0.7
33,297	+		GFF4675	0.18	-2.7
33,297	+		GFF4675	0.18	+0.4
33,297	+		GFF4675	0.18	+0.0
33,297	+		GFF4675	0.18	-0.6
33,297	+		GFF4675	0.18	-1.0
33,297	+		GFF4675	0.18	-3.9
33,297	+		GFF4675	0.18	+0.1
33,297	+		GFF4675	0.18	-0.3
33,298	-		GFF4675	0.19	-0.1
33,298	-		GFF4675	0.19	+0.2
33,298	-		GFF4675	0.19	-1.1
33,313	+		GFF4675	0.21	-1.9
33,313	+		GFF4675	0.21	-1.0
33,314	-		GFF4675	0.21	-0.9
33,404	+		GFF4675	0.37	-0.5
33,404	+		GFF4675	0.37	-2.1
33,405	-		GFF4675	0.38	+0.6
33,405	-		GFF4675	0.38	-0.6
33,552	+		GFF4675	0.64	-1.2
33,553	-		GFF4675	0.64	-0.2
33,575	-		GFF4675	0.68	-0.1
33,638	+		GFF4675	0.79	-1.5
33,639	-		GFF4675	0.79	-1.8
33,643	+		GFF4675	0.80	-0.1
33,643	+		GFF4675	0.80	+0.1
33,643	+		GFF4675	0.80	-0.4
33,767	+				+0.1
33,767	+				-0.4
33,767	+				-0.9
33,767	+				-1.0
33,767	+				-0.4
33,767	+				-0.0
33,767	+				-0.2
33,767	+				-0.8
33,767	+				+2.0
33,767	+				+0.8
33,767	+				-0.2
33,767	+				-0.1
33,767	+				-0.1
33,767	+				-0.3
33,767	+				-1.8
33,767	+				+1.4
33,767	+				-0.6
33,767	+				-0.3
33,767	+				-2.8
33,768	-				+0.1
33,768	-				-0.1
33,768	-				+0.7
33,768	-				+0.7
33,768	-				-0.0
33,768	-				+0.2
33,768	-				+0.3
33,768	-				+0.8
33,768	-				-0.8
33,768	-				-0.6
33,768	-				-0.8
33,828	+				+0.6
33,828	+				-0.5
33,829	-				-0.9
33,829	-				-0.6
33,933	+		GFF4676	0.15	-0.4
33,933	+		GFF4676	0.15	+0.7
33,933	+		GFF4676	0.15	-0.0
33,933	+		GFF4676	0.15	-1.1
33,933	+		GFF4676	0.15	-0.3
33,933	+		GFF4676	0.15	+0.2
33,934	-		GFF4676	0.15	+0.9
33,934	-		GFF4676	0.15	+0.4
33,934	-		GFF4676	0.15	+0.7
33,934	-		GFF4676	0.15	+1.0
33,934	-		GFF4676	0.15	-0.5
33,934	-		GFF4676	0.15	-2.5
33,934	-		GFF4676	0.15	+0.1
34,040	+		GFF4676	0.24	-0.0
34,040	+		GFF4676	0.24	+0.7
34,041	-		GFF4676	0.24	+0.0
34,041	-		GFF4676	0.24	-0.2
34,041	-		GFF4676	0.24	-1.8
34,151	+		GFF4676	0.34	+0.7
34,151	+		GFF4676	0.34	-0.9
34,152	-		GFF4676	0.34	+1.3
34,152	-		GFF4676	0.34	-2.0
34,152	-		GFF4676	0.34	+0.4